The rumen microbiome: balancing food security and environmental impacts

I Mizrahi, RJ Wallace, S Moraïs - Nature Reviews Microbiology, 2021 - nature.com
Ruminants produce edible products and contribute to food security. They house a complex
rumen microbial community that enables the host to digest their plant feed through microbial …

Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present, and future

SA Huws, CJ Creevey, LB Oyama, I Mizrahi… - Frontiers in …, 2018 - frontiersin.org
The rumen is a complex ecosystem composed of anaerobic bacteria, protozoa, fungi,
methanogenic archaea and phages. These microbes interact closely to breakdown plant …

Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance

P Munk, C Brinch, FD Møller, TN Petersen… - Nature …, 2022 - nature.com
Antimicrobial resistance (AMR) is a major threat to global health. Understanding the
emergence, evolution, and transmission of individual antibiotic resistance genes (ARGs) is …

Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery

RD Stewart, MD Auffret, A Warr, AW Walker… - Nature …, 2019 - nature.com
Ruminants provide essential nutrition for billions of people worldwide. The rumen is a
specialized stomach that is adapted to the breakdown of plant-derived complex …

The rumen microbiome: a crucial consideration when optimising milk and meat production and nitrogen utilisation efficiency

C Matthews, F Crispie, E Lewis, M Reid… - Gut …, 2019 - Taylor & Francis
Methane is generated in the foregut of all ruminant animals by the microorganisms present.
Dietary manipulation is regarded as the most effective and most convenient way to reduce …

Colonization and development of the gut microbiome in calves

Y Du, Y Gao, M Hu, J Hou, L Yang, X Wang… - Journal of Animal …, 2023 - Springer
Colonization and development of the gut microbiome are crucial for the growth and health of
calves. In this review, we summarized the colonization, beneficial nutrition, immune function …

The fecal resistome of dairy cattle is associated with diet during nursing

J Liu, DH Taft, MX Maldonado-Gomez… - Nature …, 2019 - nature.com
Antimicrobial resistance is a global public health concern, and livestock play a significant
role in selecting for resistance and maintaining such reservoirs. Here we study the …

[HTML][HTML] Ruminal microbiota–host interaction and its effect on nutrient metabolism

K Liu, Y Zhang, Z Yu, Q Xu, N Zheng, S Zhao, G Huang… - Animal Nutrition, 2021 - Elsevier
Rumen microbiota has a close and intensive interaction with the ruminants. Microbiota
residing in the rumen digests and ferments plant organic matters into nutrients that are …

Whole genome sequencing and metagenomics for outbreak investigation, source attribution and risk assessment of food‐borne microorganisms

EFSA Panel on Biological Hazards (EFSA … - EFSA …, 2019 - Wiley Online Library
This Opinion considers the application of whole genome sequencing (WGS) and
metagenomics for outbreak investigation, source attribution and risk assessment of food …

[HTML][HTML] Long-term application of organic fertilization causes the accumulation of antibiotic resistome in earthworm gut microbiota

J Ding, D Zhu, B Hong, HT Wang, G Li, YB Ma… - Environment …, 2019 - Elsevier
Antibiotic resistance genes (ARGs), prevalent across multiple environmental media, threaten
human health worldwide and are considered emerging environmental contaminants …