[HTML][HTML] Rationally designed synthetic protein hydrogels with predictable mechanical properties

J Wu, P Li, C Dong, H Jiang, B Xue, X Gao… - Nature …, 2018 - nature.com
Designing synthetic protein hydrogels with tailored mechanical properties similar to naturally
occurring tissues is an eternal pursuit in tissue engineering and stem cell and cancer …

[HTML][HTML] Quantifying cation-π interactions in marine adhesive proteins using single-molecule force spectroscopy

J Zhang, H Lei, M Qin, W Wang, Y Cao - Supramolecular Materials, 2022 - Elsevier
In marine adhesives, cation-π interactions play an important role in their liquid-liquid phase
separation process and underlying their strong interfacial bonding. However, it remains …

Ultrafast folding kinetics and cooperativity of villin headpiece in single-molecule force spectroscopy

G Žoldák, J Stigler, B Pelz, H Li… - Proceedings of the …, 2013 - National Acad Sciences
In this study we expand the accessible dynamic range of single-molecule force spectroscopy
by optical tweezers to the microsecond range by fast sampling. We are able to investigate a …

[HTML][HTML] Protein folding mechanism revealed by single-molecule force spectroscopy experiments

H Sun, Z Guo, H Hong, P Yu, Z Xue, H Chen - Biophysics Reports, 2021 - ncbi.nlm.nih.gov
Force spectroscopy experiments use mechanical force as a control factor to regulate the
folding and unfolding process of proteins. Atomic force microscopy has been widely used to …

Single Molecule Force Spectroscopy Reveals Force-Enhanced Binding of Calcium Ions by Gelsolin

C Lv, X Gao, W Li, R Robinson, M Qin, L Burtnick… - Biophysical …, 2014 - cell.com
Force is increasingly recognized as an important element in controlling biological
processes. Forces are able to deform native protein conformations leading to protein …

A novel folding pathway of the villin headpiece subdomain HP35

E Wang, P Tao, J Wang, Y Xiao - Physical Chemistry Chemical Physics, 2019 - pubs.rsc.org
The villin headpiece subdomain (HP35) is a fast-folding protein with 35 residues and its
folding pathways have been extensively studied experimentally and theoretically but remain …

Evaluation of protein–ligand affinity prediction using steered molecular dynamics simulations

N Okimoto, A Suenaga, M Taiji - Journal of Biomolecular Structure …, 2017 - Taylor & Francis
In computational drug design, ranking a series of compound analogs in a manner that is
consistent with experimental affinities remains a challenge. In this study, we evaluated the …

Soliton driven relaxation dynamics and protein collapse in the villin headpiece

A Krokhotin, M Lundgren, AJ Niemi… - Journal of Physics …, 2013 - iopscience.iop.org
Protein collapse from a random chain to the native state involves a dynamical phase
transition. During the process, new scales and collective variables become excited while old …

Determining the relative binding affinity of ricin toxin A inhibitors by using molecular docking and nonequilibrium work

EJF Chaves, IQM Padilha, DAM Araujo… - Journal of Chemical …, 2018 - ACS Publications
Ricin is a ribosome-inactivating protein (RIP type 2) consisting of two subunits, ricin toxin A
(RTA) and ricin toxin B (RTB). Because of its cytotoxicity, ricin has worried world authorities …

Thermally induced protein unfolding probed by isotope-edited IR spectroscopy

L Wang, JL Skinner - The Journal of Physical Chemistry B, 2012 - ACS Publications
Infrared (IR) spectroscopy has been widely utilized for the study of protein folding, unfolding,
and misfolding processes. We have previously developed a theoretical method for …