[HTML][HTML] Protein domain identification methods and online resources
Y Wang, H Zhang, H Zhong, Z Xue - Computational and structural …, 2021 - Elsevier
Protein domains are the basic units of proteins that can fold, function, and evolve
independently. Knowledge of protein domains is critical for protein classification …
independently. Knowledge of protein domains is critical for protein classification …
Immunoinformatics: In Silico Approaches and Computational Design of a Multi-epitope, Immunogenic Protein
AA Bahrami, Z Payandeh, S Khalili… - International reviews …, 2019 - Taylor & Francis
Immunoinformatics is a new critical field with several tools and databases that conduct the
eyesight of experimental selection and facilitate analysis of the great amount of immunologic …
eyesight of experimental selection and facilitate analysis of the great amount of immunologic …
FUpred: detecting protein domains through deep-learning-based contact map prediction
Motivation Protein domains are subunits that can fold and function independently. Correct
domain boundary assignment is thus a critical step toward accurate protein structure and …
domain boundary assignment is thus a critical step toward accurate protein structure and …
SWORD2: hierarchical analysis of protein 3D structures
Understanding the functions and origins of proteins requires splitting these macromolecules
into fragments that could be independent in terms of folding, activity, or evolution. For that …
into fragments that could be independent in terms of folding, activity, or evolution. For that …
ThreaDom: extracting protein domain boundary information from multiple threading alignments
Motivation: Protein domains are subunits that can fold and evolve independently.
Identification of domain boundary locations is often the first step in protein folding and …
Identification of domain boundary locations is often the first step in protein folding and …
DoBo: Protein domain boundary prediction by integrating evolutionary signals and machine learning
Background Accurate identification of protein domain boundaries is useful for protein
structure determination and prediction. However, predicting protein domain boundaries from …
structure determination and prediction. However, predicting protein domain boundaries from …
DNN-Dom: predicting protein domain boundary from sequence alone by deep neural network
Motivation Accurate delineation of protein domain boundary plays an important role for
protein engineering and structure prediction. Although machine-learning methods are …
protein engineering and structure prediction. Although machine-learning methods are …
ThreaDomEx: a unified platform for predicting continuous and discontinuous protein domains by multiple-threading and segment assembly
We develop a hierarchical pipeline, ThreaDomEx, for both continuous domain (CD) and
discontinuous domain (DCD) structure predictions. Starting from a query sequence …
discontinuous domain (DCD) structure predictions. Starting from a query sequence …
Malphite: A convolutional neural network and ensemble learning based protein secondary structure predictor
Y Li, T Shibuya - 2015 IEEE International Conference on …, 2015 - ieeexplore.ieee.org
We developed a convolution neural networks (CNN) and ensemble learning based method,
called Malphite, to predict protein secondary structures. Maphite has three sub-models: the …
called Malphite, to predict protein secondary structures. Maphite has three sub-models: the …
Res-Dom: predicting protein domain boundary from sequence using deep residual network and Bi-LSTM
L Wang, H Zhong, Z Xue, Y Wang - Bioinformatics Advances, 2022 - academic.oup.com
Motivation Protein domains are the basic units of proteins that can fold, function and evolve
independently. Protein domain boundary partition plays an important role in protein structure …
independently. Protein domain boundary partition plays an important role in protein structure …