Recent advances in understanding mechanisms of insect cuticle differentiation

B Moussian - Insect biochemistry and molecular biology, 2010 - Elsevier
Insects possess a cuticle that covers all tissues exposed to the outside world including the
body, the fore-and hindgut and the luminal side of the tracheae. The cuticle is a …

In search of lost small peptides

S Plaza, G Menschaert, F Payre - Annual Review of Cell and …, 2017 - annualreviews.org
A large body of evidence indicates that genome annotation pipelines have biased our view
of coding sequences because they generally undersample small proteins and peptides. The …

[HTML][HTML] Low affinity binding site clusters confer hox specificity and regulatory robustness

J Crocker, N Abe, L Rinaldi, AP McGregor, N Frankel… - Cell, 2015 - cell.com
In animals, Hox transcription factors define regional identity in distinct anatomical domains.
How Hox genes encode this specificity is a paradox, because different Hox proteins bind …

Phenotypic robustness conferred by apparently redundant transcriptional enhancers

N Frankel, GK Davis, D Vargas, S Wang, F Payre… - Nature, 2010 - nature.com
Genes include cis-regulatory regions that contain transcriptional enhancers. Recent reports
have shown that developmental genes often possess multiple discrete enhancer modules …

Small Peptides Switch the Transcriptional Activity of Shavenbaby During Drosophila Embryogenesis

T Kondo, S Plaza, J Zanet, E Benrabah, P Valenti… - Science, 2010 - science.org
A substantial proportion of eukaryotic transcripts are considered to be noncoding RNAs
because they contain only short open reading frames (sORFs). Recent findings suggest …

[HTML][HTML] Peptides encoded by short ORFs control development and define a new eukaryotic gene family

MI Galindo, JI Pueyo, S Fouix, SA Bishop… - PLoS biology, 2007 - journals.plos.org
Despite recent advances in developmental biology, and the sequencing and annotation of
genomes, key questions regarding the organisation of cells into embryos remain. One …

Morphological evolution through multiple cis-regulatory mutations at a single gene

AP McGregor, V Orgogozo, I Delon, J Zanet… - Nature, 2007 - nature.com
One central, and yet unsolved, question in evolutionary biology is the relationship between
the genetic variants segregating within species and the causes of morphological differences …

Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA

T Kondo, Y Hashimoto, K Kato, S Inagaki… - Nature cell …, 2007 - nature.com
Transcriptome analyses in eukaryotes, including mice and humans, have identified polyA-
containing transcripts that lack long open reading frames (ORFs;> 100 amino acids),. These …

[HTML][HTML] Multi-enhancer transcriptional hubs confer phenotypic robustness

A Tsai, MRP Alves, J Crocker - Elife, 2019 - elifesciences.org
We previously showed in Drosophila melanogaster embryos that low-affinity Ultrabithorax
(Ubx)-responsive shavenbaby (svb) enhancers drive expression using localized …

[HTML][HTML] Transcriptional mechanisms link epithelial plasticity to adhesion and differentiation of epidermal progenitor cells

B Lee, A Villarreal-Ponce, M Fallahi, J Ovadia, P Sun… - Developmental cell, 2014 - cell.com
During epithelial tissue morphogenesis, developmental progenitor cells undergo dynamic
adhesive and cytoskeletal remodeling to trigger proliferation and migration. Transcriptional …