Respiratory syncytial virus prevention within reach: the vaccine and monoclonal antibody landscape

NI Mazur, J Terstappen, R Baral, A Bardají… - The Lancet Infectious …, 2023 - thelancet.com
Respiratory syncytial virus is the second most common cause of infant mortality and a major
cause of morbidity and mortality in older adults (aged> 60 years). Efforts to develop a …

Vaccine adjuvants: mechanisms and platforms

T Zhao, Y Cai, Y Jiang, X He, Y Wei, Y Yu… - Signal transduction and …, 2023 - nature.com
Adjuvants are indispensable components of vaccines. Despite being widely used in
vaccines, their action mechanisms are not yet clear. With a greater understanding of the …

De novo design of protein structure and function with RFdiffusion

JL Watson, D Juergens, NR Bennett, BL Trippe, J Yim… - Nature, 2023 - nature.com
There has been considerable recent progress in designing new proteins using deep-
learning methods,,,,,,,–. Despite this progress, a general deep-learning framework for protein …

Robust deep learning–based protein sequence design using ProteinMPNN

J Dauparas, I Anishchenko, N Bennett, H Bai… - Science, 2022 - science.org
Although deep learning has revolutionized protein structure prediction, almost all
experimentally characterized de novo protein designs have been generated using …

De novo design of protein interactions with learned surface fingerprints

P Gainza, S Wehrle, A Van Hall-Beauvais, A Marchand… - Nature, 2023 - nature.com
Physical interactions between proteins are essential for most biological processes
governing life. However, the molecular determinants of such interactions have been …

Broad betacoronavirus neutralization by a stem helix–specific human antibody

D Pinto, MM Sauer, N Czudnochowski, JS Low… - Science, 2021 - science.org
The spillovers of betacoronaviruses in humans and the emergence of severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) variants highlight the need for broad …

Broadly applicable and accurate protein design by integrating structure prediction networks and diffusion generative models

JL Watson, D Juergens, NR Bennett, BL Trippe, J Yim… - BioRxiv, 2022 - biorxiv.org
There has been considerable recent progress in designing new proteins using deep
learning methods–. Despite this progress, a general deep learning framework for protein …

Antibodies to combat viral infections: development strategies and progress

G Pantaleo, B Correia, C Fenwick, VS Joo… - Nature Reviews Drug …, 2022 - nature.com
Monoclonal antibodies (mAbs) are appealing as potential therapeutics and prophylactics for
viral infections owing to characteristics such as their high specificity and their ability to …

Rethinking attention with performers

K Choromanski, V Likhosherstov, D Dohan… - arXiv preprint arXiv …, 2020 - arxiv.org
We introduce Performers, Transformer architectures which can estimate regular (softmax)
full-rank-attention Transformers with provable accuracy, but using only linear (as opposed to …

Protein assembly by design

J Zhu, N Avakyan, A Kakkis, AM Hoffnagle… - Chemical …, 2021 - ACS Publications
Proteins are nature's primary building blocks for the construction of sophisticated molecular
machines and dynamic materials, ranging from protein complexes such as photosystem II …