The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

B Smith, M Ashburner, C Rosse, J Bard, W Bug… - Nature …, 2007 - nature.com
The value of any kind of data is greatly enhanced when it exists in a form that allows it to be
integrated with other data. One approach to integration is through the annotation of multiple …

[HTML][HTML] Methods in biomedical ontology

CY Alexander - Journal of biomedical informatics, 2006 - Elsevier
Research on ontologies is becoming widespread in the biomedical informatics community.
At the same time, it has become apparent that the challenges of properly constructing and …

[图书][B] Introduction to description logic

F Baader, I Horrocks, C Lutz, U Sattler - 2017 - books.google.com
Description logics (DLs) have a long tradition in computer science and knowledge
representation, being designed so that domain knowledge can be described and so that …

[图书][B] Building ontologies with basic formal ontology

R Arp, B Smith, AD Spear - 2015 - books.google.com
An introduction to the field of applied ontology with examples derived particularly from
biomedicine, covering theoretical components, design practices, and practical applications …

[HTML][HTML] Relations in biomedical ontologies

B Smith, W Ceusters, B Klagges, J Köhler, A Kumar… - Genome biology, 2005 - Springer
To enhance the treatment of relations in biomedical ontologies we advance a methodology
for providing consistent and unambiguous formal definitions of the relational expressions …

[HTML][HTML] Multilingual translation for zero-shot biomedical classification using BioTranslator

H Xu, A Woicik, H Poon, RB Altman, S Wang - Nature Communications, 2023 - nature.com
Existing annotation paradigms rely on controlled vocabularies, where each data instance is
classified into one term from a predefined set of controlled vocabularies. This paradigm …

Ontological realism: A methodology for coordinated evolution of scientific ontologies

B Smith, W Ceusters - Applied ontology, 2010 - content.iospress.com
Since 2002 we have been testing and refining a methodology for ontology development that
is now being used by multiple groups of researchers in different life science domains. Gary …

The evaluation of ontologies: Toward improved semantic interoperability

L Obrst, W Ceusters, I Mani, S Ray, B Smith - … knowledge discovery in the …, 2007 - Springer
Recent years have seen rapid progress in the development of ontologies as semantic
models intended to capture and represent aspects of the real world. There is, however, great …

The Arabic ontology–an Arabic wordnet with ontologically clean content

M Jarrar - Applied ontology, 2021 - content.iospress.com
We present a formal Arabic wordnet built on the basis of a carefully designed ontology
hereby referred to as the Arabic Ontology. The ontology provides a formal representation of …

[HTML][HTML] Key choices in the design of Simple Knowledge Organization System (SKOS)

T Baker, S Bechhofer, A Isaac, A Miles… - Journal of Web …, 2013 - Elsevier
Abstract Simple Knowledge Organization System (SKOS) provides a data model and
vocabulary for expressing Knowledge Organization Systems (KOSs) such as thesauri and …