Recent advances in machine learning-based models for prediction of antiviral peptides

F Ali, H Kumar, W Alghamdi, FA Kateb… - Archives of Computational …, 2023 - Springer
Viruses have killed and infected millions of people across the world. It causes several
chronic diseases like COVID-19, HIV, and hepatitis. To cope with such diseases and virus …

AIPs-SnTCN: Predicting anti-inflammatory peptides using fastText and transformer encoder-based hybrid word embedding with self-normalized temporal …

A Raza, J Uddin, A Almuhaimeed, S Akbar… - Journal of chemical …, 2023 - ACS Publications
Inflammation is a biologically resistant response to harmful stimuli, such as infection,
damaged cells, toxic chemicals, or tissue injuries. Its purpose is to eradicate pathogenic …

Comparative analysis of the existing methods for prediction of antifreeze proteins

A Khan, J Uddin, F Ali, A Banjar, A Daud - Chemometrics and Intelligent …, 2023 - Elsevier
Antifreeze proteins (AFPs) are found in different living organisms like plants, insects, and
fish. AFPs avoid the formation of ice crystals in these organisms and make them able to …

Deepstacked-AVPs: predicting antiviral peptides using tri-segment evolutionary profile and word embedding based multi-perspective features with deep stacking …

S Akbar, A Raza, Q Zou - BMC bioinformatics, 2024 - Springer
Background Viral infections have been the main health issue in the last decade. Antiviral
peptides (AVPs) are a subclass of antimicrobial peptides (AMPs) with substantial potential to …

AFP-SPTS: an accurate prediction of antifreeze proteins using sequential and pseudo-tri-slicing evolutionary features with an extremely randomized tree

A Khan, J Uddin, F Ali, H Kumar… - Journal of Chemical …, 2023 - ACS Publications
The development of intracellular ice in the bodies of cold-blooded living organisms may
cause them to die. These species yield antifreeze proteins (AFPs) to live in subzero …

DBP-DeepCNN: prediction of DNA-binding proteins using wavelet-based denoising and deep learning

F Ali, H Kumar, S Patil, A Ahmed, A Banjar… - … and Intelligent Laboratory …, 2022 - Elsevier
DNA-binding proteins (DBPs) are highly concerned with several types of cancers (lung,
breast, and liver), other fatal diseases (AIDS/HIV, asthma), and are used in the designing of …

Prediction of antifreeze proteins using machine learning

A Khan, J Uddin, F Ali, A Ahmad, O Alghushairy… - Scientific Reports, 2022 - nature.com
Living organisms including fishes, microbes, and animals can live in extremely cold weather.
To stay alive in cold environments, these species generate antifreeze proteins (AFPs), also …

Target-DBPPred: an intelligent model for prediction of DNA-binding proteins using discrete wavelet transform based compression and light eXtreme gradient boosting

F Ali, H Kumar, S Patil, K Kotecha, A Banjar… - Computers in Biology …, 2022 - Elsevier
DNA-protein interaction is a critical biological process that performs influential activities,
including DNA transcription and recombination. DBPs (DNA-binding proteins) are closely …

Deep-AGP: Prediction of angiogenic protein by integrating two-dimensional convolutional neural network with discrete cosine transform

F Ali, W Alghamdi, AO Almagrabi, O Alghushairy… - International Journal of …, 2023 - Elsevier
Angiogenic proteins (AGPs) play a primary role in the formation of new blood vessels from
pre-existing ones. AGPs have diverse applications in cancer, including serving as …

Prediction of amyloid proteins using embedded evolutionary & ensemble feature selection based descriptors with eXtreme gradient boosting model

S Akbar, H Ali, A Ahmad, MR Sarker, A Saeed… - IEEE …, 2023 - ieeexplore.ieee.org
Amyloid proteins (AMYs) are usually an aggregate of insoluble fibrous that have major
pathogenic effects on various tissues. However, its abnormal deposition may lead to several …