Nucleus segmentation: towards automated solutions

R Hollandi, N Moshkov, L Paavolainen, E Tasnadi… - Trends in Cell …, 2022 - cell.com
Single nucleus segmentation is a frequent challenge of microscopy image processing, since
it is the first step of many quantitative data analysis pipelines. The quality of tracking single …

Basic quantitative morphological methods applied to the central nervous system

L Slomianka - Journal of Comparative Neurology, 2021 - Wiley Online Library
Generating numbers has become an almost inevitable task associated with studies of the
morphology of the nervous system. Numbers serve a desire for clarity and objectivity in the …

Nucmm dataset: 3d neuronal nuclei instance segmentation at sub-cubic millimeter scale

Z Lin, D Wei, MD Petkova, Y Wu, Z Ahmed, KS K… - … Image Computing and …, 2021 - Springer
Segmenting 3D cell nuclei from microscopy image volumes is critical for biological and
clinical analysis, enabling the study of cellular expression patterns and cell lineages …

Optical Diffraction Tomography and Raman Confocal Microscopy for the Investigation of Vacuoles Associated with Cancer Senescent Engulfing Cells

S Ghislanzoni, JW Kang, A Bresci, A Masella… - Biosensors, 2023 - mdpi.com
Wild-type p53 cancer therapy-induced senescent cells frequently engulf and degrade
neighboring ones inside a massive vacuole in their cytoplasm. After clearance of the …

Efficient automatic 3D segmentation of cell nuclei for high-content screening

M Marzec, A Piórkowski, A Gertych - BMC bioinformatics, 2022 - Springer
Background High-content screening (HCS) is a pre-clinical approach for the assessment of
drug efficacy. On modern platforms, it involves fluorescent image capture using three …

Multimode Gesture Recognition Algorithm Based on Convolutional Long Short‐Term Memory Network

MX Lu, GZ Du, ZF Li - Computational Intelligence and …, 2022 - Wiley Online Library
Gesture recognition utilizes deep learning network model to automatically extract deep
features of data; however, traditional machine learning algorithms rely on manual feature …

The interplay of seizures-induced axonal sprouting and transcription-dependent Bdnf repositioning in the model of temporal lobe epilepsy

A Skupien-Jaroszek, A Walczak, I Czaban, KK Pels… - PLoS …, 2021 - journals.plos.org
The Brain-Derived Neurotrophic Factor is one of the most important trophic proteins in the
brain. The role of this growth factor in neuronal plasticity, in health and disease, has been …

[HTML][HTML] Neuronal activation affects the organization and protein composition of the nuclear speckles

AA Szczepankiewicz, K Parobczak… - … et Biophysica Acta (BBA …, 2024 - Elsevier
Nuclear speckles, also known as interchromatin granule clusters (IGCs), are subnuclear
domains highly enriched in proteins involved in transcription and mRNA metabolism and …

[HTML][HTML] 3d segmentation of neuronal nuclei and cell-type identification using multi-channel information

A LaTorre, L Alonso-Nanclares, JM Peña… - Expert Systems with …, 2021 - Elsevier
Abstract (250max) Background Analyzing images to accurately estimate the number of
different cell types in the brain using automatic methods is a major objective in …

A Hierarchical Deep Learning Framework for Nuclei 3D Reconstruction from Microscopic Stack-Images of 3D Cancer Cell Culture

T Maylaa, F Windal, H Benhabiles, G Maubon… - … : Selected Papers of …, 2023 - Springer
In this article, we propose a hierarchical deep learning framework for the nuclei 3D
reconstruction from a stack of microscopic images representing 3D cancer cell culture. The …