Identification of EMT signaling cross-talk and gene regulatory networks by single-cell RNA sequencing
AP Deshmukh, SV Vasaikar… - Proceedings of the …, 2021 - National Acad Sciences
The epithelial-to-mesenchymal transition (EMT) plays a critical role during normal
development and in cancer progression. EMT is induced by various signaling pathways …
development and in cancer progression. EMT is induced by various signaling pathways …
Observation of universal ageing dynamics in antibiotic persistence
Y Kaplan, S Reich, E Oster, S Maoz, I Levin-Reisman… - Nature, 2021 - nature.com
Stress responses allow cells to adapt to changes in external conditions by activating specific
pathways. Here we investigate the dynamics of single cells that were subjected to acute …
pathways. Here we investigate the dynamics of single cells that were subjected to acute …
Intrinsically disordered proteins and conformational noise: The hypothesis a decade later
P Kulkarni, R Salgia, G Rangarajan - Iscience, 2023 - cell.com
Phenotypic plasticity is the ability of individual genotypes to produce different phenotypes in
response to environmental perturbations. We previously postulated how conformational …
response to environmental perturbations. We previously postulated how conformational …
Landscape of epithelial–mesenchymal plasticity as an emergent property of coordinated teams in regulatory networks
Elucidating the design principles of regulatory networks driving cellular decision-making has
fundamental implications in mapping and eventually controlling cell-fate decisions. Despite …
fundamental implications in mapping and eventually controlling cell-fate decisions. Despite …
Immunosuppressive traits of the hybrid epithelial/mesenchymal phenotype
Recent preclinical and clinical data suggests enhanced metastatic fitness of hybrid
epithelial/mesenchymal (E/M) phenotypes, but mechanistic details regarding their survival …
epithelial/mesenchymal (E/M) phenotypes, but mechanistic details regarding their survival …
Comparative study of transcriptomics-based scoring metrics for the epithelial-hybrid-mesenchymal spectrum
The Epithelial–mesenchymal transition (EMT) is a cellular process implicated in embryonic
development, wound healing, and pathological conditions such as cancer metastasis and …
development, wound healing, and pathological conditions such as cancer metastasis and …
Machine learning meets physics: A two-way street
This article introduces a special issue on the interaction between the rapidly expanding field
of machine learning and ongoing research in physics. The first half of the papers in this …
of machine learning and ongoing research in physics. The first half of the papers in this …
Minimal frustration underlies the usefulness of incomplete regulatory network models in biology
Regulatory networks as large and complex as those implicated in cell-fate choice are
expected to exhibit intricate, very high-dimensional dynamics. Cell-fate choice, however, is a …
expected to exhibit intricate, very high-dimensional dynamics. Cell-fate choice, however, is a …
Group behavior and emergence of cancer drug resistance
Drug resistance is a major impediment in cancer. Although it is generally thought that
acquired drug resistance is due to genetic mutations, emerging evidence indicates that …
acquired drug resistance is due to genetic mutations, emerging evidence indicates that …
Topological signatures in regulatory network enable phenotypic heterogeneity in small cell lung cancer
Phenotypic (non-genetic) heterogeneity has significant implications for the development and
evolution of organs, organisms, and populations. Recent observations in multiple cancers …
evolution of organs, organisms, and populations. Recent observations in multiple cancers …