[HTML][HTML] De novo molecular design and generative models

J Meyers, B Fabian, N Brown - Drug discovery today, 2021 - Elsevier
Molecular design strategies are integral to therapeutic progress in drug discovery.
Computational approaches for de novo molecular design have been developed over the …

Concepts of artificial intelligence for computer-assisted drug discovery

X Yang, Y Wang, R Byrne, G Schneider… - Chemical …, 2019 - ACS Publications
Artificial intelligence (AI), and, in particular, deep learning as a subcategory of AI, provides
opportunities for the discovery and development of innovative drugs. Various machine …

Advances in de novo drug design: from conventional to machine learning methods

VD Mouchlis, A Afantitis, A Serra, M Fratello… - International journal of …, 2021 - mdpi.com
De novo drug design is a computational approach that generates novel molecular structures
from atomic building blocks with no a priori relationships. Conventional methods include …

GuacaMol: benchmarking models for de novo molecular design

N Brown, M Fiscato, MHS Segler… - Journal of chemical …, 2019 - ACS Publications
De novo design seeks to generate molecules with required property profiles by virtual
design-make-test cycles. With the emergence of deep learning and neural generative …

Molecular de-novo design through deep reinforcement learning

M Olivecrona, T Blaschke, O Engkvist… - Journal of …, 2017 - Springer
This work introduces a method to tune a sequence-based generative model for molecular de
novo design that through augmented episodic likelihood can learn to generate structures …

Application advances of deep learning methods for de novo drug design and molecular dynamics simulation

Q Bai, S Liu, Y Tian, T Xu… - Wiley …, 2022 - Wiley Online Library
De novo drug design is a stationary way to build novel ligands in the confined pocket of
receptor by assembling the atoms or fragments, while molecular dynamics (MD) simulation …

Relation: A deep generative model for structure-based de novo drug design

M Wang, CY Hsieh, J Wang, D Wang… - Journal of Medicinal …, 2022 - ACS Publications
Deep learning (DL)-based de novo molecular design has recently gained considerable
traction. Many DL-based generative models have been successfully developed to design …

The chemical space project

JL Reymond - Accounts of chemical research, 2015 - ACS Publications
Conspectus One of the simplest questions that can be asked about molecular diversity is
how many organic molecules are possible in total? To answer this question, my research …

The properties of known drugs. 1. Molecular frameworks

GW Bemis, MA Murcko - Journal of medicinal chemistry, 1996 - ACS Publications
In order to better understand the common features present in drug molecules, we use shape
description methods to analyze a database of commercially available drugs and prepare a …

A fast flexible docking method using an incremental construction algorithm

M Rarey, B Kramer, T Lengauer, G Klebe - Journal of molecular biology, 1996 - Elsevier
We present an automatic method for docking organic ligands into protein binding sites. The
method can be used in the design process of specific protein ligands. It combines an …