[HTML][HTML] De novo molecular design and generative models
Molecular design strategies are integral to therapeutic progress in drug discovery.
Computational approaches for de novo molecular design have been developed over the …
Computational approaches for de novo molecular design have been developed over the …
Concepts of artificial intelligence for computer-assisted drug discovery
X Yang, Y Wang, R Byrne, G Schneider… - Chemical …, 2019 - ACS Publications
Artificial intelligence (AI), and, in particular, deep learning as a subcategory of AI, provides
opportunities for the discovery and development of innovative drugs. Various machine …
opportunities for the discovery and development of innovative drugs. Various machine …
Advances in de novo drug design: from conventional to machine learning methods
De novo drug design is a computational approach that generates novel molecular structures
from atomic building blocks with no a priori relationships. Conventional methods include …
from atomic building blocks with no a priori relationships. Conventional methods include …
GuacaMol: benchmarking models for de novo molecular design
N Brown, M Fiscato, MHS Segler… - Journal of chemical …, 2019 - ACS Publications
De novo design seeks to generate molecules with required property profiles by virtual
design-make-test cycles. With the emergence of deep learning and neural generative …
design-make-test cycles. With the emergence of deep learning and neural generative …
Molecular de-novo design through deep reinforcement learning
M Olivecrona, T Blaschke, O Engkvist… - Journal of …, 2017 - Springer
This work introduces a method to tune a sequence-based generative model for molecular de
novo design that through augmented episodic likelihood can learn to generate structures …
novo design that through augmented episodic likelihood can learn to generate structures …
Application advances of deep learning methods for de novo drug design and molecular dynamics simulation
De novo drug design is a stationary way to build novel ligands in the confined pocket of
receptor by assembling the atoms or fragments, while molecular dynamics (MD) simulation …
receptor by assembling the atoms or fragments, while molecular dynamics (MD) simulation …
Relation: A deep generative model for structure-based de novo drug design
Deep learning (DL)-based de novo molecular design has recently gained considerable
traction. Many DL-based generative models have been successfully developed to design …
traction. Many DL-based generative models have been successfully developed to design …
The chemical space project
JL Reymond - Accounts of chemical research, 2015 - ACS Publications
Conspectus One of the simplest questions that can be asked about molecular diversity is
how many organic molecules are possible in total? To answer this question, my research …
how many organic molecules are possible in total? To answer this question, my research …
The properties of known drugs. 1. Molecular frameworks
GW Bemis, MA Murcko - Journal of medicinal chemistry, 1996 - ACS Publications
In order to better understand the common features present in drug molecules, we use shape
description methods to analyze a database of commercially available drugs and prepare a …
description methods to analyze a database of commercially available drugs and prepare a …
A fast flexible docking method using an incremental construction algorithm
We present an automatic method for docking organic ligands into protein binding sites. The
method can be used in the design process of specific protein ligands. It combines an …
method can be used in the design process of specific protein ligands. It combines an …