Harmonization of brain diffusion MRI: concepts and methods

MS Pinto, R Paolella, T Billiet, P Van Dyck… - Frontiers in …, 2020 - frontiersin.org
MRI diffusion data suffers from significant inter-and intra-site variability, which hinders multi-
site and/or longitudinal diffusion studies. This variability may arise from a range of factors …

[HTML][HTML] The sensitivity of diffusion MRI to microstructural properties and experimental factors

M Afzali, T Pieciak, S Newman, E Garyfallidis… - Journal of Neuroscience …, 2021 - Elsevier
Diffusion MRI is a non-invasive technique to study brain microstructure. Differences in the
microstructural properties of tissue, including size and anisotropy, can be represented in the …

[HTML][HTML] Unsupervised MR harmonization by learning disentangled representations using information bottleneck theory

L Zuo, BE Dewey, Y Liu, Y He, SD Newsome… - NeuroImage, 2021 - Elsevier
In magnetic resonance (MR) imaging, a lack of standardization in acquisition often causes
pulse sequence-based contrast variations in MR images from site to site, which impedes …

A general primer for data harmonization

C Cheng, L Messerschmidt, I Bravo, M Waldbauer… - Scientific data, 2024 - nature.com
Data harmonization is an important method for combining or transforming data. To date
however, articles about data harmonization are field-specific and highly technical, making it …

Scanner invariant representations for diffusion MRI harmonization

D Moyer, G Ver Steeg, CMW Tax… - Magnetic resonance in …, 2020 - Wiley Online Library
Purpose In the present work, we describe the correction of diffusion‐weighted MRI for site
and scanner biases using a novel method based on invariant representation. Theory and …

The ENIGMA Stroke Recovery Working Group: Big data neuroimaging to study brain–behavior relationships after stroke

SL Liew, A Zavaliangos‐Petropulu… - Human brain …, 2022 - Wiley Online Library
The goal of the Enhancing Neuroimaging Genetics through Meta‐Analysis (ENIGMA) Stroke
Recovery working group is to understand brain and behavior relationships using well …

Ten quick tips for computational analysis of medical images

D Chicco, R Shiradkar - PLoS computational biology, 2023 - journals.plos.org
Medical imaging is a great asset for modern medicine, since it allows physicians to spatially
interrogate a disease site, resulting in precise intervention for diagnosis and treatment, and …

Combining transcranial magnetic stimulation with functional magnetic resonance imaging for probing and modulating neural circuits relevant to affective disorders

DJ Oathes, NL Balderston, KP Kording… - Wiley …, 2021 - Wiley Online Library
Combining transcranial magnetic stimulation (TMS) with functional magnetic resonance
imaging offers an unprecedented tool for studying how brain networks interact in vivo and …

Multisite harmonization of structural DTI networks in children: An A-CAP study

AI Onicas, AL Ware, AD Harris, MH Beauchamp… - Frontiers in …, 2022 - frontiersin.org
The analysis of large, multisite neuroimaging datasets provides a promising means for
robust characterization of brain networks that can reduce false positives and improve …

Current best practices and future opportunities for reproducible findings using large-scale neuroimaging in psychiatry

N Jahanshad, P Lenzini, J Bijsterbosch - Neuropsychopharmacology, 2024 - nature.com
Research into the brain basis of psychopathology is challenging due to the heterogeneity of
psychiatric disorders, extensive comorbidities, underdiagnosis or overdiagnosis …