Rising to the challenge: accelerated pace of discovery transforms marine virology
JR Brum, MB Sullivan - Nature Reviews Microbiology, 2015 - nature.com
Marine viruses have important roles in microbial mortality, gene transfer, metabolic
reprogramming and biogeochemical cycling. In this Review, we discuss recent technological …
reprogramming and biogeochemical cycling. In this Review, we discuss recent technological …
Marine viruses: truth or dare
M Breitbart - Annual review of marine science, 2012 - annualreviews.org
Over the past two decades, marine virology has progressed from a curiosity to an intensely
studied topic of critical importance to oceanography. At concentrations of approximately 10 …
studied topic of critical importance to oceanography. At concentrations of approximately 10 …
VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences
K Kieft, Z Zhou, K Anantharaman - Microbiome, 2020 - Springer
Background Viruses are central to microbial community structure in all environments. The
ability to generate large metagenomic assemblies of mixed microbial and viral sequences …
ability to generate large metagenomic assemblies of mixed microbial and viral sequences …
Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation
AL Grazziotin, EV Koonin… - Nucleic acids research, 2016 - academic.oup.com
Viruses are the most abundant and diverse biological entities on earth, and while most of
this diversity remains completely unexplored, advances in genome sequencing have …
this diversity remains completely unexplored, advances in genome sequencing have …
Bacterial vesicles in marine ecosystems
Many heterotrophic bacteria are known to release extracellular vesicles, facilitating
interactions between cells and their environment from a distance. Vesicle production has not …
interactions between cells and their environment from a distance. Vesicle production has not …
Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell-and meta-genomics
Viruses modulate microbial communities and alter ecosystem functions. However, due to
cultivation bottlenecks, specific virus–host interaction dynamics remain cryptic. In this study …
cultivation bottlenecks, specific virus–host interaction dynamics remain cryptic. In this study …
Exploring the viral world through metagenomics
K Rosario, M Breitbart - Current opinion in virology, 2011 - Elsevier
Viral metagenomics, or shotgun sequencing of purified viral particles, has revolutionized the
field of environmental virology by allowing the exploration of viral communities in a variety of …
field of environmental virology by allowing the exploration of viral communities in a variety of …
Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere
M Krupovic, D Prangishvili, RW Hendrix… - Microbiology and …, 2011 - Am Soc Microbiol
Prokaryotes, bacteria and archaea, are the most abundant cellular organisms among those
sharing the planet Earth with human beings (among others). However, numerous ecological …
sharing the planet Earth with human beings (among others). However, numerous ecological …
Diversity and abundance of single-stranded DNA viruses in human feces
In this study, we investigated the abundance and diversity of single-stranded DNA (ssDNA)
viruses in fecal samples from five healthy individuals through a combination of serial …
viruses in fecal samples from five healthy individuals through a combination of serial …
VIROME: a standard operating procedure for analysis of viral metagenome sequences
KE Wommack, J Bhavsar, SW Polson, J Chen… - Standards in genomic …, 2012 - Springer
One consistent finding among studies using shotgun metagenomics to analyze whole viral
communities is that most viral sequences show no significant homology to known …
communities is that most viral sequences show no significant homology to known …