A survey of methods for 3D histology reconstruction
Histology permits the observation of otherwise invisible structures of the internal topography
of a specimen. Although it enables the investigation of tissues at a cellular level, it is invasive …
of a specimen. Although it enables the investigation of tissues at a cellular level, it is invasive …
A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology
The human thalamus is a brain structure that comprises numerous, highly specific nuclei.
Since these nuclei are known to have different functions and to be connected to different …
Since these nuclei are known to have different functions and to be connected to different …
[HTML][HTML] An overview of image registration for aligning mass spectrometry imaging with clinically relevant imaging modalities
B Balluff, RMA Heeren, AM Race - … of Mass Spectrometry and Advances in …, 2022 - Elsevier
Mass spectrometry imaging (MSI) is used in many aspects of clinical research, including
pharmacokinetics, toxicology, personalised medicine, and surgical decision-making …
pharmacokinetics, toxicology, personalised medicine, and surgical decision-making …
The creation of a brain atlas for image guided neurosurgery using serial histological data
MM Chakravarty, G Bertrand, CP Hodge, AF Sadikot… - Neuroimage, 2006 - Elsevier
Digital and print brain atlases have been used with success to help in the planning of
neurosurgical interventions. In this paper, a technique presented for the creation of a brain …
neurosurgical interventions. In this paper, a technique presented for the creation of a brain …
A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data
This paper describes the construction of an atlas of the human basal ganglia. The
successive steps of the construction were as follows. First a postmortem specimen was …
successive steps of the construction were as follows. First a postmortem specimen was …
Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI
DH Adler, J Pluta, S Kadivar, C Craige, JC Gee… - Neuroimage, 2014 - Elsevier
Recently, there has been a growing effort to analyze the morphometry of hippocampal
subfields using both in vivo and postmortem magnetic resonance imaging (MRI). However …
subfields using both in vivo and postmortem magnetic resonance imaging (MRI). However …
Towards a comprehensive atlas of cortical connections in a primate brain: Mapping tracer injection studies of the common marmoset into a reference digital template
The marmoset is an emerging animal model for large‐scale attempts to understand primate
brain connectivity, but achieving this aim requires the development and validation of …
brain connectivity, but achieving this aim requires the development and validation of …
Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain
The correlation between post-mortem data and in-vivo brain images is of high interest for
studying neurodegenerative diseases. This paper describes a protocol that matches a series …
studying neurodegenerative diseases. This paper describes a protocol that matches a series …
3D reconstruction of skin and spatial mapping of immune cell density, vascular distance and effects of sun exposure and aging
Mapping the human body at single cell resolution in three dimensions (3D) is important for
understanding cellular interactions in context of tissue and organ organization. 2D spatial …
understanding cellular interactions in context of tissue and organ organization. 2D spatial …
Automatic 3D nonlinear registration of mass spectrometry imaging and magnetic resonance imaging data
WM Abdelmoula, MS Regan, BGC Lopez… - Analytical …, 2019 - ACS Publications
Multimodal integration between mass spectrometry imaging (MSI) and radiology-established
modalities such as magnetic resonance imaging (MRI) would allow the investigations of key …
modalities such as magnetic resonance imaging (MRI) would allow the investigations of key …