Candida albicans Biofilms and Human Disease

CJ Nobile, AD Johnson - Annual review of microbiology, 2015 - annualreviews.org
In humans, microbial cells (including bacteria, archaea, and fungi) greatly outnumber host
cells. Candida albicans is the most prevalent fungal species of the human microbiota; this …

Modelling and analysis of gene regulatory networks

G Karlebach, R Shamir - Nature reviews Molecular cell biology, 2008 - nature.com
Gene regulatory networks have an important role in every process of life, including cell
differentiation, metabolism, the cell cycle and signal transduction. By understanding the …

A recently evolved transcriptional network controls biofilm development in Candida albicans

CJ Nobile, EP Fox, JE Nett, TR Sorrells, QM Mitrovich… - Cell, 2012 - cell.com
A biofilm is an organized, resilient group of microbes in which individual cells acquire
properties, such as drug resistance, that are distinct from those observed in suspension …

Universally sloppy parameter sensitivities in systems biology models

RN Gutenkunst, JJ Waterfall, FP Casey… - PLoS computational …, 2007 - journals.plos.org
Quantitative computational models play an increasingly important role in modern biology.
Such models typically involve many free parameters, and assigning their values is often a …

Mapping the Core of the Arabidopsis Circadian Clock Defines the Network Structure of the Oscillator

W Huang, P Pérez-García, A Pokhilko, AJ Millar… - Science, 2012 - science.org
In many organisms, the circadian clock is composed of functionally coupled morning and
evening oscillators. In Arabidopsis, oscillator coupling relies on a core loop in which the …

Circadian control of carbohydrate availability for growth in Arabidopsis plants at night

A Graf, A Schlereth, M Stitt… - Proceedings of the …, 2010 - National Acad Sciences
Plant growth is driven by photosynthetic carbon fixation during the day. Some photosynthate
is accumulated, often as starch, to support nocturnal metabolism and growth at night. The …

FKF1 conveys timing information for CONSTANS stabilization in photoperiodic flowering

YH Song, RW Smith, BJ To, AJ Millar, T Imaizumi - Science, 2012 - science.org
Plants use day-length information to coordinate flowering time with the appropriate season
to maximize reproduction. In Arabidopsis, the long day–specific expression of CONSTANS …

Light-regulated transcriptional networks in higher plants

Y Jiao, OS Lau, XW Deng - Nature Reviews Genetics, 2007 - nature.com
Plants have evolved complex and sophisticated transcriptional networks that mediate
developmental changes in response to light. These light-regulated processes include …

Plant circadian rhythms

CR McClung - The Plant Cell, 2006 - academic.oup.com
The earth rotates on its axis every 24 h, with the result that any position on the earth's
surface alternately faces toward or away from the sun—day and night. That the metabolism …

Strengths and limitations of period estimation methods for circadian data

T Zielinski, AM Moore, E Troup, KJ Halliday, AJ Millar - PloS one, 2014 - journals.plos.org
A key step in the analysis of circadian data is to make an accurate estimate of the underlying
period. There are many different techniques and algorithms for determining period, all with …