Green giant—a tiny chloroplast genome with mighty power to produce highvalue proteins: history and phylogeny
Freeliving cyanobacteria were entrapped by eukaryotic cells~ 2 billion years ago, ultimately
giving rise to chloroplasts. After a century of debate, the presence of chloroplast DNA was …
giving rise to chloroplasts. After a century of debate, the presence of chloroplast DNA was …
Plant DNA barcoding: from gene to genome
ABSTRACT DNA barcoding is currently a widely used and effective tool that enables rapid
and accurate identification of plant species; however, none of the available loci work across …
and accurate identification of plant species; however, none of the available loci work across …
HybPiper: Extracting coding sequence and introns for phylogenetics from highthroughput sequencing reads using target enrichment
Premise of the study: Using sequence data generated via target enrichment for
phylogenetics requires reassembly of highthroughput sequence reads into loci, presenting …
phylogenetics requires reassembly of highthroughput sequence reads into loci, presenting …
From barcodes to genomes: extending the concept of DNA barcoding
DNA barcoding has had a major impact on biodiversity science. The elegant simplicity of
establishing massive scale databases for a few barcode loci is continuing to change our …
establishing massive scale databases for a few barcode loci is continuing to change our …
Telling plant species apart with DNA: from barcodes to genomes
PM Hollingsworth, DZ Li… - … Transactions of the …, 2016 - royalsocietypublishing.org
Land plants underpin a multitude of ecosystem functions, support human livelihoods and
represent a critically important component of terrestrial biodiversity—yet many tens of …
represent a critically important component of terrestrial biodiversity—yet many tens of …
[HTML][HTML] From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes
Background Next-generation sequencing has provided a wealth of plastid genome
sequence data from an increasingly diverse set of green plants (Viridiplantae). Although …
sequence data from an increasingly diverse set of green plants (Viridiplantae). Although …
HybSeq: Combining target enrichment and genome skimming for plant phylogenomics
• Premise of the study: HybSeq, the combination of target enrichment and genome
skimming, allows simultaneous data collection for lowcopy nuclear genes and highcopy …
skimming, allows simultaneous data collection for lowcopy nuclear genes and highcopy …
High-throughput genomic data in systematics and phylogenetics
High-throughput genomic sequencing is rapidly changing the field of phylogenetics by
decreasing the cost and increasing the quantity and rate of data collection by several orders …
decreasing the cost and increasing the quantity and rate of data collection by several orders …
Practical considerations for plant phylogenomics
MR McKain, MG Johnson… - Applications in plant …, 2018 - Wiley Online Library
The past decade has seen a major breakthrough in our ability to easily and inexpensively
sequence genomescale data from diverse lineages. The development of highthroughput …
sequence genomescale data from diverse lineages. The development of highthroughput …
Chloroplast DNA sequence utility for the lowest phylogenetic and phylogeographic inferences in angiosperms: the tortoise and the hare IV
J Shaw, HL Shafer, OR Leonard… - American Journal of …, 2014 - Wiley Online Library
• Premise of the study: Noncoding chloroplast DNA (NCcpDNA) sequences are the staple
data source of lowlevel phylogeographic and phylogenetic studies of angiosperms. We …
data source of lowlevel phylogeographic and phylogenetic studies of angiosperms. We …