Epistasis and evolution: recent advances and an outlook for prediction

MS Johnson, G Reddy, MM Desai - BMC biology, 2023 - Springer
As organisms evolve, the effects of mutations change as a result of epistatic interactions with
other mutations accumulated along the line of descent. This can lead to shifts in adaptability …

Environment-independent distribution of mutational effects emerges from microscopic epistasis

SM Ardell, A Martsul, MS Johnson, S Kryazhimskiy - Science, 2024 - science.org
Predicting how new mutations alter phenotypes is difficult because mutational effects vary
across genotypes and environments. Recently discovered global epistasis, in which the …

Fitness effects of mutations throughout evolution

H Ertl - Nature Reviews Genetics, 2024 - nature.com
Fitness effects of mutations throughout evolution | Nature Reviews Genetics Skip to main
content Thank you for visiting nature.com. You are using a browser version with limited …

Evolution of evolvability in rapidly adapting populations

JT Ferrare, BH Good - Nature Ecology & Evolution, 2024 - nature.com
Mutations can alter the short-term fitness of an organism, as well as the rates and benefits of
future mutations. While numerous examples of these evolvability modifiers have been …

Patterns of Fitness and Gene Expression Epistasis Generated by Beneficial Mutations in the rho and rpoB Genes of Escherichia coli during High-Temperature …

A González-González, TN Batarseh… - Molecular Biology …, 2024 - academic.oup.com
Epistasis is caused by genetic interactions among mutations that affect fitness. To
characterize properties and potential mechanisms of epistasis, we engineered eight double …

Effects of periodic bottlenecks on the dynamics of adaptive evolution in microbial populations

M Izutsu, DM Lake, ZWD Matson, JP Dodson… - …, 2024 - microbiologyresearch.org
Population bottlenecks can impact the rate of adaptation in evolving populations. On the one
hand, each bottleneck reduces the genetic variation that fuels adaptation. On the other hand …

The distribution of fitness effects during adaptive walks using a simple genetic network

NLV O'Brien, B Holland, J Engelstädter… - PLoS …, 2024 - journals.plos.org
The tempo and mode of adaptation depends on the availability of beneficial alleles. Genetic
interactions arising from gene networks can restrict this availability. However, the extent to …

Linking Molecular Mechanisms to their Evolutionary Consequences: a primer

R Grah, CC Guet, G Tkačik, M Lagator - Genetics, 2024 - academic.oup.com
A major obstacle to predictive understanding of evolution stems from the complexity of
biological systems, which prevents detailed characterization of key evolutionary properties …

Resolving deleterious and near-neutral effects requires different pooled fitness assay designs

A Limdi, M Baym - Journal of Molecular Evolution, 2023 - Springer
Pooled sequencing-based fitness assays are a powerful and widely used approach to
quantifying fitness of thousands of genetic variants in parallel. Despite the throughput of …

The distribution of beneficial mutational effects between two sister yeast species poorly explains natural outcomes of vineyard adaptation

ER Longan, JC Fay - Genetics, 2024 - academic.oup.com
Domesticated strains of Saccharomyces cerevisiae have adapted to resist copper and
sulfite, two chemical stressors commonly used in winemaking. S. paradoxus has not …