Fourth report on chicken genes and chromosomes 2022
The chicken continues to hold its position as a leading model organism within many areas of
research, as well as being a major source of protein for human consumption. The First …
research, as well as being a major source of protein for human consumption. The First …
Update of the FANTOM web resource: expansion to provide additional transcriptome atlases
M Lizio, I Abugessaisa, S Noguchi, A Kondo… - Nucleic acids …, 2019 - academic.oup.com
The FANTOM web resource (http://fantom. gsc. riken. jp/) was developed to provide easy
access to the data produced by the FANTOM project. It contains the most complete and …
access to the data produced by the FANTOM project. It contains the most complete and …
Comparative transcriptomics of primary cells in vertebrates
Gene expression profiles in homologous tissues have been observed to be different
between species, which may be due to differences between species in the gene expression …
between species, which may be due to differences between species in the gene expression …
Dosage compensation of Z sex chromosome genes in avian fibroblast cells
R Deviatiiarov, H Nagai, G Ismagulov, A Stupina… - Genome Biology, 2023 - Springer
In birds, sex is genetically determined; however, the molecular mechanism is not well-
understood. The avian Z sex chromosome (chrZ) lacks whole chromosome inactivation, in …
understood. The avian Z sex chromosome (chrZ) lacks whole chromosome inactivation, in …
Alternative transcription start sites contribute to acute-stress-induced transcriptome response in human skeletal muscle
PA Makhnovskii, OA Gusev, RO Bokov, GR Gazizova… - Human Genomics, 2022 - Springer
Background More than half of human protein-coding genes have an alternative transcription
start site (TSS). We aimed to investigate the contribution of alternative TSSs to the acute …
start site (TSS). We aimed to investigate the contribution of alternative TSSs to the acute …
Mapping and Functional Dissection of the Rumpless Trait in Piao Chicken Identifies a Causal Loss of Function Mutation in the Novel Gene Rum
Y Guo, J Tian, C Song, W Han, C Zhu… - Molecular biology …, 2023 - academic.oup.com
Rumpless chickens exhibit an abnormality in their tail development. The genetics and
biology of this trait has been studied for decades to illustrate a broad variation in both the …
biology of this trait has been studied for decades to illustrate a broad variation in both the …
Simple and efficient profiling of transcription initiation and transcript levels with STRIPE-seq
Accurate mapping of transcription start sites (TSSs) is key for understanding transcriptional
regulation. However, current protocols for genome-wide TSS profiling are laborious and/or …
regulation. However, current protocols for genome-wide TSS profiling are laborious and/or …
Cysteine enrichment mediates co-option of uricase in reptilian skin and transition to uricotelism
G Mori, A Liuzzi, L Ronda, M Di Palma… - Molecular Biology …, 2023 - academic.oup.com
Uric acid is the main means of nitrogen excretion in uricotelic vertebrates (birds and reptiles)
and the end product of purine catabolism in humans and a few other mammals. While …
and the end product of purine catabolism in humans and a few other mammals. While …
Global Analysis of Transcription Start Sites in the New Ovine Reference Genome (Oar rambouillet v1.0)
The overall aim of the Ovine FAANG project is to provide a comprehensive annotation of the
new highly contiguous sheep reference genome sequence (Oar rambouillet v1. 0). Mapping …
new highly contiguous sheep reference genome sequence (Oar rambouillet v1. 0). Mapping …
Cis-regulatory interfaces reveal the molecular mechanisms underlying the notochord gene regulatory network of Ciona
LJ Negrón-Piñeiro, Y Wu, S Popsuj… - Nature …, 2024 - nature.com
Tissue-specific gene expression is fundamental in development and evolution, and is
mediated by transcription factors and by the cis-regulatory regions (enhancers) that they …
mediated by transcription factors and by the cis-regulatory regions (enhancers) that they …