Facilitating the adoption of high‐throughput sequencing technologies as a plant pest diagnostic test in laboratories: A step‐by‐step description
High‐throughput sequencing (HTS) is a powerful tool that enables the simultaneous
detection and potential identification of any organisms present in a sample. The growing …
detection and potential identification of any organisms present in a sample. The growing …
Discrepancies between prokaryotes and eukaryotes need to be considered in soil DNA‐based studies
Metabarcoding approaches are exponentially increasing our understanding of soil
biodiversity, with a major focus on the bacterial part of the microbiome. Part of the soil …
biodiversity, with a major focus on the bacterial part of the microbiome. Part of the soil …
Contrasting seasonal patterns in diet and dung‐associated invertebrates of feral cattle and horses in a rewilding area
Trophic rewilding is increasingly applied in restoration efforts, with the aim of reintroducing
the ecological functions provided by large‐bodied mammals and thereby promote self …
the ecological functions provided by large‐bodied mammals and thereby promote self …
Nematode mitochondrial metagenomics: A new tool for biodiversity analysis
EM Gendron, JL Sevigny, I Byiringiro… - Molecular Ecology …, 2023 - Wiley Online Library
DNA barcoding approaches have greatly increased our understanding of biodiversity on the
planet, and metabarcoding is widely used for classifying members of the phylum Nematoda …
planet, and metabarcoding is widely used for classifying members of the phylum Nematoda …
[HTML][HTML] Impacts of long-term organic production on soil fauna in boreal dairy and cereal farming
Intensified arable farming results in fewer functional groups of soil biota with decreased
biodiversity. Organic farming with slurry fertilization and long crop rotation cycles favors soil …
biodiversity. Organic farming with slurry fertilization and long crop rotation cycles favors soil …
[HTML][HTML] Extracting DNA from soil or directly from isolated nematodes indicate dissimilar community structure for Europe-wide forest soils
Nematodes are numerous in soils and play a crucial role in soil food-webs. DNA
metabarcoding offers a time-effective alternative to morphology-based assessments of …
metabarcoding offers a time-effective alternative to morphology-based assessments of …
In silico assessment of 18S rDNA metabarcoding markers for the characterization of nematode communities
GF Ficetola, A Guerrieri, I Cantera, A Bonin - Plos one, 2024 - journals.plos.org
Nematodes are keystone actors of soil, freshwater and marine ecosystems, but the
complexity of morphological identification has limited broad-scale monitoring of nematode …
complexity of morphological identification has limited broad-scale monitoring of nematode …
High trophic level organisms and the complexity of soil micro-food webs at aggregate scale regulate carbon accumulation in cropland soils
Z Yao, C Huang, H Hu, T Wang, Y Li, X Sun… - Agriculture, Ecosystems …, 2024 - Elsevier
Enhancing soil organic carbon (SOC) levels via improved fertilization strategies can promote
soil health and support sustainable crop production. While bacteria and fungi play a key role …
soil health and support sustainable crop production. While bacteria and fungi play a key role …
Evaluation of metabarcoding primers for analysis of soil nematode communities
While recent advances in next-generation sequencing technologies have accelerated
research in microbial ecology, the application of high throughput approaches to study the …
research in microbial ecology, the application of high throughput approaches to study the …
Development and application of a DNA metabarcoding method for comprehensive analysis of soil nematode communities
M Kawanobe, K Toyota, K Ritz - Applied Soil Ecology, 2021 - Elsevier
Nematodes mediate soil ecosystem functions together with other soil biota and are
employed as effective ecological indicators. Among nematodes, plant-parasitic nematodes …
employed as effective ecological indicators. Among nematodes, plant-parasitic nematodes …