[HTML][HTML] Long non-coding RNAs: definitions, functions, challenges and recommendations

JS Mattick, PP Amaral, P Carninci… - … reviews Molecular cell …, 2023 - nature.com
Genes specifying long non-coding RNAs (lncRNAs) occupy a large fraction of the genomes
of complex organisms. The term 'lncRNAs' encompasses RNA polymerase I (Pol I), Pol II …

[图书][B] RNA, the epicenter of genetic information

J Mattick, P Amaral - 2023 - library.oapen.org
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …

piRNA biogenesis in the germline: From transcription of piRNA genomic sources to piRNA maturation

S Hirakata, MC Siomi - Biochimica et Biophysica Acta (BBA)-Gene …, 2016 - Elsevier
PIWI-interacting RNAs (piRNAs) are small non-coding RNAs enriched in animal gonads
where they repress transposons to maintain genome integrity. Because of the highly tissue …

Multiple LINEs of retrotransposon silencing mechanisms in the mammalian germline

F Yang, PJ Wang - Seminars in cell & developmental biology, 2016 - Elsevier
Retrotransposons play an important role in genome evolution but pose acute challenges to
host genome integrity, particularly in early stage germ cells where epigenetic control is …

[HTML][HTML] Multi-omic analysis elucidates the genetic basis of hydrocephalus

AT Hale, L Bastarache, DM Morales, JC Wellons… - Cell reports, 2021 - cell.com
We conducted PrediXcan analysis of hydrocephalus risk in ten neurological tissues and
whole blood. Decreased expression of MAEL in the brain was significantly associated …

The DNA binding high mobility group box protein family functionally binds RNA

DJ Hamilton, AE Hein, DS Wuttke… - Wiley Interdisciplinary …, 2023 - Wiley Online Library
Nucleic acid binding proteins regulate transcription, splicing, RNA stability, RNA localization,
and translation, together tailoring gene expression in response to stimuli. Upon discovery …

[HTML][HTML] Retrotransposon LINE-1 bodies in the cytoplasm of piRNA-deficient mouse spermatocytes: Ribonucleoproteins overcoming the integrated stress response

C De Luca, A Gupta, A Bortvin - PLoS genetics, 2023 - journals.plos.org
Transposable elements (TE) are mobile DNA sequences whose excessive proliferation
endangers the host. Although animals have evolved robust TE-targeting defenses, including …

[HTML][HTML] Alternate roles of sox transcription factors beyond transcription initiation

Y Zhang, L Hou - International Journal of Molecular Sciences, 2021 - mdpi.com
Sox proteins are known as crucial transcription factors for many developmental processes
and for a wide range of common diseases. They were believed to specifically bind and bend …

[HTML][HTML] Protein-based condensation mechanisms drive the assembly of RNA-rich P granules

H Schmidt, A Putnam, D Rasoloson, G Seydoux - Elife, 2021 - elifesciences.org
Germ granules are protein-RNA condensates that segregate with the embryonic germline. In
Caenorhabditis elegans embryos, germ (P) granule assembly requires MEG-3, an …

The DNA-Binding High-Mobility Group Box Domain of Sox Family Proteins Directly Interacts with RNA In Vitro

DJ Hamilton, AE Hein, ZE Holmes, DS Wuttke… - Biochemistry, 2022 - ACS Publications
There is a growing body of evidence that a substantial number of protein domains identified
as DNA-binding also interact with RNA to regulate biological processes. Several recent …