CHARMM: the biomolecular simulation program

BR Brooks, CL Brooks III… - Journal of …, 2009 - Wiley Online Library
Abstract CHARMM (Chemistry at HARvard Molecular Mechanics) is a highly versatile and
widely used molecular simulation program. It has been developed over the last three …

Combinatorial biosynthesis of reduced polyketides

KJ Weissman, PF Leadlay - Nature reviews microbiology, 2005 - nature.com
The bacterial multienzyme polyketide synthases (PKSs) produce a diverse array of products
that have been developed into medicines, including antibiotics and anticancer agents. The …

EMAN2: an extensible image processing suite for electron microscopy

G Tang, L Peng, PR Baldwin, DS Mann, W Jiang… - Journal of structural …, 2007 - Elsevier
EMAN is a scientific image processing package with a particular focus on single particle
reconstruction from transmission electron microscopy (TEM) images. It was first released in …

Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy

PB Rosenthal, R Henderson - Journal of molecular biology, 2003 - Elsevier
A computational procedure is described for assigning the absolute hand of the structure of a
protein or assembly determined by single-particle electron microscopy. The procedure …

The 2.7-Å crystal structure of a 194-kDa homodimeric fragment of the 6-deoxyerythronolide B synthase

Y Tang, CY Kim, II Mathews… - Proceedings of the …, 2006 - National Acad Sciences
The x-ray crystal structure of a 194-kDa fragment from module 5 of the 6-deoxyerythronolide
B synthase has been solved at 2.7 Å resolution. Each subunit of the homodimeric protein …

Building structural models of a whole mycoplasma cell

M Maritan, L Autin, J Karr, MW Covert, AJ Olson… - Journal of molecular …, 2022 - Elsevier
Building structural models of entire cells has been a long-standing cross-discipline
challenge for the research community, as it requires an unprecedented level of integration …

Biomolecules under mechanical force

S Kumar, MS Li - Physics Reports, 2010 - Elsevier
Recent advances in single molecule experiments have raised many challenges. These
challenges can be met by a proper understanding of the inter-and intra-molecular …

Lipoic acid metabolism in microbial pathogens

MD Spalding, ST Prigge - Microbiology and Molecular Biology …, 2010 - Am Soc Microbiol
SUMMARY Lipoic acid [(R)-5-(1, 2-dithiolan-3-yl) pentanoic acid] is an enzyme cofactor
required for intermediate metabolism in free-living cells. Lipoic acid was discovered nearly …

Biomimetic protein nanoparticles facilitate enhanced dendritic cell activation and cross-presentation

NM Molino, AKL Anderson, EL Nelson, SW Wang - ACS nano, 2013 - ACS Publications
Many current cancer vaccine strategies suffer from the inability to mount a CD8 T cell
response that is strong enough to overcome the low immunogenicity of tumors. Viruses …

Structure and assembly of scalable porous protein cages

E Sasaki, D Böhringer, M Van De Waterbeemd… - Nature …, 2017 - nature.com
Proteins that self-assemble into regular shell-like polyhedra are useful, both in nature and in
the laboratory, as molecular containers. Here we describe cryo-electron microscopy (EM) …