Dynamical memristors for higher-complexity neuromorphic computing
Research on electronic devices and materials is currently driven by both the slowing down
of transistor scaling and the exponential growth of computing needs, which make present …
of transistor scaling and the exponential growth of computing needs, which make present …
A survey of biodiversity informatics: Concepts, practices, and challenges
LMR Gadelha Jr, PC de Siracusa… - … : Data Mining and …, 2021 - Wiley Online Library
The unprecedented size of the human population, along with its associated economic
activities, has an ever‐increasing impact on global environments. Across the world …
activities, has an ever‐increasing impact on global environments. Across the world …
Molecular origins of force-dependent protein complex stabilization during bacterial infections
The unbinding pathway of a protein complex can vary significantly depending on
biochemical and mechanical factors. Under mechanical stress, a complex may dissociate …
biochemical and mechanical factors. Under mechanical stress, a complex may dissociate …
Heterogeneous CPU+ GPU-enabled simulations for DFTB molecular dynamics of large chemical and biological systems
We introduce a new heterogeneous CPU+ GPU-enhanced DFTB approach for the routine
and efficient simulation of large chemical and biological systems. Compared to …
and efficient simulation of large chemical and biological systems. Compared to …
SEEKR2: Versatile multiscale milestoning utilizing the OpenMM molecular dynamics engine
LW Votapka, AM Stokely, AA Ojha… - Journal of chemical …, 2022 - ACS Publications
We present SEEKR2 (simulation-enabled estimation of kinetic rates version 2)─ the latest
iteration in the family of SEEKR programs for using multiscale simulation methods to …
iteration in the family of SEEKR programs for using multiscale simulation methods to …
Predicting ligand binding kinetics using a Markovian milestoning with voronoi tessellations multiscale approach
Accurate and efficient computational predictions of ligand binding kinetics can be useful to
inform drug discovery campaigns, particularly in the screening and lead optimization …
inform drug discovery campaigns, particularly in the screening and lead optimization …
Multiscale simulation approaches to modeling drug–protein binding
Highlights•Drug binding is inherently multiscale as it occurs over a broad range of length
and time scales.•Multiscale simulation methods combine molecular descriptions to access …
and time scales.•Multiscale simulation methods combine molecular descriptions to access …
Fostering discoveries in the era of exascale computing: How the next generation of supercomputers empowers computational and experimental biophysics alike
MCR Melo, RC Bernardi - Biophysical Journal, 2023 - cell.com
Over a century ago, physicists started broadly relying on theoretical models to guide new
experiments. Soon thereafter, chemists began doing the same. Now, biological research …
experiments. Soon thereafter, chemists began doing the same. Now, biological research …
Incorporating Prior Knowledge in the Seeds of Adaptive Sampling Molecular Dynamics Simulations of Ligand Transport in Enzymes with Buried Active Sites
Because most proteins have buried active sites, protein tunnels or channels play a crucial
role in the transport of small molecules into buried cavities for enzymatic catalysis. Tunnels …
role in the transport of small molecules into buried cavities for enzymatic catalysis. Tunnels …
Field programmable gate arrays for enhancing the speed and energy efficiency of quantum dynamics simulations
JM Rodrı́guez-Borbón, A Kalantar… - Journal of chemical …, 2020 - ACS Publications
We present the first application of field programmable gate arrays (FPGAs) as new,
customizable hardware architectures for carrying out fast and energy-efficient quantum …
customizable hardware architectures for carrying out fast and energy-efficient quantum …