CRISPR technologies for genome, epigenome and transcriptome editing

L Villiger, J Joung, L Koblan, J Weissman… - … Reviews Molecular Cell …, 2024 - nature.com
Our ability to edit genomes lags behind our capacity to sequence them, but the growing
understanding of CRISPR biology and its application to genome, epigenome and …

Discovery of diverse CRISPR-Cas systems and expansion of the genome engineering toolbox

EV Koonin, JS Gootenberg, OO Abudayyeh - Biochemistry, 2023 - ACS Publications
CRISPR systems mediate adaptive immunity in bacteria and archaea through diverse
effector mechanisms and have been repurposed for versatile applications in therapeutics …

Programmable RNA editing with compact CRISPR–Cas13 systems from uncultivated microbes

C Xu, Y Zhou, Q Xiao, B He, G Geng, Z Wang, B Cao… - Nature …, 2021 - nature.com
Competitive coevolution between microbes and viruses has led to the diversification of
CRISPR–Cas defense systems against infectious agents. By analyzing metagenomic …

High-fidelity Cas13 variants for targeted RNA degradation with minimal collateral effects

H Tong, J Huang, Q Xiao, B He, X Dong, Y Liu… - Nature …, 2023 - nature.com
CRISPR–Cas13 systems have recently been used for targeted RNA degradation in various
organisms. However, collateral degradation of bystander RNAs has limited their in vivo …

Massively parallel Cas13 screens reveal principles for guide RNA design

HH Wessels, A Méndez-Mancilla, X Guo, M Legut… - Nature …, 2020 - nature.com
Type VI CRISPR enzymes are RNA-targeting proteins with nuclease activity that enable
specific and robust target gene knockdown without altering the genome. To define rules for …

CRISPR/Cas13 effectors have differing extents of off-target effects that limit their utility in eukaryotic cells

Y Ai, D Liang, JE Wilusz - Nucleic Acids Research, 2022 - academic.oup.com
CRISPR/Cas13 effectors have garnered increasing attention as easily customizable tools for
detecting and depleting RNAs of interest. Near perfect complementarity between a target …

Structural basis for the activation of a compact CRISPR-Cas13 nuclease

X Deng, E Osikpa, J Yang, SJ Oladeji, J Smith… - Nature …, 2023 - nature.com
The CRISPR-Cas13 ribonucleases have been widely applied for RNA knockdown and
transcriptional modulation owing to their high programmability and specificity. However, the …

Collateral activity of the CRISPR/RfxCas13d system in human cells

P Shi, MR Murphy, AO Aparicio, JS Kesner… - Communications …, 2023 - nature.com
CRISPR/Cas13 systems are increasingly used for programmable targeting of RNAs. While
Cas13 nucleases are capable of degrading both target RNAs and bystander RNAs in vitro …

Applications of CRISPR/Cas13-based RNA editing in plants

NR Kavuri, M Ramasamy, Y Qi, K Mandadi - Cells, 2022 - mdpi.com
The Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/CRISPR-
associated (Cas) system is widely used as a genome-editing tool in various organisms …

[HTML][HTML] The double life of CRISPR–Cas13

JF Bot, J van der Oost, N Geijsen - Current Opinion in Biotechnology, 2022 - Elsevier
Highlights•CRISPR–Cas13 is potentially capable of collateral RNA cleavage in eukaryotic
cells.•Target RNA levels, cell size, and cell-type-specific properties may influence the …