Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance
Trap-based surveillance strategies are widely used for monitoring of invasive insect species,
aiming to detect newly arrived exotic taxa as well as track the population levels of …
aiming to detect newly arrived exotic taxa as well as track the population levels of …
Using metagenomics to investigate human and environmental resistomes
J Bengtsson-Palme, DGJ Larsson… - Journal of …, 2017 - academic.oup.com
Antibiotic resistance is a global health concern declared by the WHO as one of the largest
threats to modern healthcare. In recent years, metagenomic DNA sequencing has started to …
threats to modern healthcare. In recent years, metagenomic DNA sequencing has started to …
Comparing environmental metabarcoding and trawling survey of demersal fish communities in the Gulf of St. Lawrence, Canada
Biodiversity assessment is an important part of conservation management that ideally can
be accomplished with noninvasive methods without influencing the structure and functioning …
be accomplished with noninvasive methods without influencing the structure and functioning …
Next-generation sequencing and PCR technologies in monitoring the hospital microbiome and its drug resistance
C Cason, M D'Accolti, I Soffritti, S Mazzacane… - Frontiers in …, 2022 - frontiersin.org
The hospital environment significantly contributes to the onset of healthcare-associated
infections (HAIs), which represent one of the most frequent complications occurring in …
infections (HAIs), which represent one of the most frequent complications occurring in …
On expert curation and scalability: UniProtKB/Swiss-Prot as a case study
Motivation Biological knowledgebases, such as UniProtKB/Swiss-Prot, constitute an
essential component of daily scientific research by offering distilled, summarized and …
essential component of daily scientific research by offering distilled, summarized and …
Developing a non-destructive metabarcoding protocol for detection of pest insects in bulk trap catches
Metabarcoding has the potential to revolutionise insect surveillance by providing high-
throughput and cost-effective species identification of all specimens within mixed trap …
throughput and cost-effective species identification of all specimens within mixed trap …
The diversity of uncharacterized antibiotic resistance genes can be predicted from known gene variants—but not always
J Bengtsson-Palme - Microbiome, 2018 - Springer
Background Antibiotic resistance is considered one of the most urgent threats to modern
healthcare, and the role of the environment in resistance development is increasingly …
healthcare, and the role of the environment in resistance development is increasingly …
[HTML][HTML] Best practice data life cycle approaches for the life sciences
PC Griffin, J Khadake, KS LeMay, SE Lewis… - …, 2017 - ncbi.nlm.nih.gov
Throughout history, the life sciences have been revolutionised by technological advances; in
our era this is manifested by advances in instrumentation for data generation, and …
our era this is manifested by advances in instrumentation for data generation, and …
Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker
Motivation Correct taxonomic identification of DNA sequences is central to studies of
biodiversity using both shotgun metagenomic and metabarcoding approaches. However, no …
biodiversity using both shotgun metagenomic and metabarcoding approaches. However, no …
Community eDNA metabarcoding as a detection tool for documenting freshwater mussel (Unionidae) species assemblages
SA Coghlan, CA Currier, J Freeland… - Environmental …, 2021 - Wiley Online Library
Documenting species occurrences and habitat occupancy of unionid mussels can often be
challenging. Environmental DNA (eDNA) has been shown to be a reliable tool for detecting …
challenging. Environmental DNA (eDNA) has been shown to be a reliable tool for detecting …