[HTML][HTML] Unraveling B cell trajectories at single cell resolution
D Morgan, V Tergaonkar - Trends in immunology, 2022 - cell.com
During adaptive immunity, B cells differentiate either into memory B cells or plasma cells and
produce antibodies against foreign antigens to fight infection. Additionally, they behave as …
produce antibodies against foreign antigens to fight infection. Additionally, they behave as …
Single-cell RNA counting at allele and isoform resolution using Smart-seq3
Large-scale sequencing of RNA from individual cells can reveal patterns of gene, isoform
and allelic expression across cell types and states. However, current short-read single-cell …
and allelic expression across cell types and states. However, current short-read single-cell …
Design and application of single-cell RNA sequencing to study kidney immune cells in lupus nephritis
DA Rao, A Arazi, D Wofsy, B Diamond - Nature Reviews Nephrology, 2020 - nature.com
The immune mechanisms that cause tissue injury in lupus nephritis have been challenging
to define. The advent of high-dimensional cellular analyses, such as single-cell RNA …
to define. The advent of high-dimensional cellular analyses, such as single-cell RNA …
Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA
R Volden, T Palmer, A Byrne, C Cole… - Proceedings of the …, 2018 - National Acad Sciences
High-throughput short-read sequencing has revolutionized how transcriptomes are
quantified and annotated. However, while Illumina short-read sequencers can be used to …
quantified and annotated. However, while Illumina short-read sequencers can be used to …
RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes
Despite the rapid advance in single-cell RNA sequencing (scRNA-seq) technologies within
the last decade, single-cell transcriptome analysis workflows have primarily used gene …
the last decade, single-cell transcriptome analysis workflows have primarily used gene …
[HTML][HTML] Tn5 transposase applied in genomics research
N Li, K Jin, Y Bai, H Fu, L Liu, B Liu - International journal of molecular …, 2020 - mdpi.com
The development of high-throughput sequencing (next-generation sequencing technology
(NGS)) and the continuous increase in experimental throughput require the upstream …
(NGS)) and the continuous increase in experimental throughput require the upstream …
NanoPARE: parallel analysis of RNA 5′ ends from low-input RNA
Diverse RNA 5′ ends are generated through both transcriptional and post-transcriptional
processes. These important modes of gene regulation often vary across cell types and can …
processes. These important modes of gene regulation often vary across cell types and can …
[HTML][HTML] Transposase-assisted tagmentation of RNA/DNA hybrid duplexes
Tn5-mediated transposition of double-strand DNA has been widely utilized in various high-
throughput sequencing applications. Here, we report that the Tn5 transposase is also …
throughput sequencing applications. Here, we report that the Tn5 transposase is also …
Mobile genomics: tools and techniques for tackling transposons
K O'Neill, D Brocks… - … Transactions of the …, 2020 - royalsocietypublishing.org
Next-generation sequencing approaches have fundamentally changed the types of
questions that can be asked about gene function and regulation. With the goal of …
questions that can be asked about gene function and regulation. With the goal of …
[HTML][HTML] Clonal and quantitative in vivo assessment of hematopoietic stem cell differentiation reveals strong erythroid potential of multipotent cells
SW Boyer, S Rajendiran, AE Beaudin, S Smith-Berdan… - Stem Cell Reports, 2019 - cell.com
Hematopoiesis is arguably one of the best understood stem cell systems; however,
significant challenges remain to reach a consensus understanding of the lineage potential …
significant challenges remain to reach a consensus understanding of the lineage potential …