Sixty-five years of the long march in protein secondary structure prediction: the final stretch?

Y Yang, J Gao, J Wang, R Heffernan… - Briefings in …, 2018 - academic.oup.com
Protein secondary structure prediction began in 1951 when Pauling and Corey predicted
helical and sheet conformations for protein polypeptide backbone even before the first …

HLA‐EMMA: a user‐friendly tool to analyse HLA class I and class II compatibility on the amino acid level

CSM Kramer, J Koster, GW Haasnoot, DL Roelen… - Hla, 2020 - Wiley Online Library
In renal transplantation, polymorphic amino acids on mismatched donor HLA molecules can
lead to the induction of de novo donor‐specific antibodies (DSA), which are associated with …

Modeling disordered protein interactions from biophysical principles

LX Peterson, A Roy, C Christoffer… - PLoS computational …, 2017 - journals.plos.org
Disordered protein-protein interactions (PPIs), those involving a folded protein and an
intrinsically disordered protein (IDP), are prevalent in the cell, including important signaling …

Cysteine-Rich Atrial Secretory Protein from the Snail Achatina achatina: Purification and Structural Characterization

S Shabelnikov, A Kiselev - PloS one, 2015 - journals.plos.org
Despite extensive studies of cardiac bioactive peptides and their functions in molluscs,
soluble proteins expressed in the heart and secreted into the circulation have not yet been …

Subtle sequence differences between two interacting σ54‐dependent regulators lead to different activation mechanisms

D Pacheco‐Sánchez, P Marín… - The FEBS …, 2022 - Wiley Online Library
In the strictly anaerobic nitrate reducing bacterium Aromatoleum anaerobium, degradation of
1, 3‐dihydroxybenzene (1, 3‐DHB, resorcinol) is controlled by two bacterial enhancer …

Computational and experimental analysis of bioactive peptide linear motifs in the integrin adhesome

KT O'Brien, K Golla, T Kranjc, D O'Donovan, S Allen… - Plos one, 2019 - journals.plos.org
Therapeutic modulation of protein interactions is challenging, but short linear motifs (SLiMs)
represent potential targets. Focal adhesions play a central role in adhesion by linking cells …