ABA-mediated transcriptional regulation in response to osmotic stress in plants

Y Fujita, M Fujita, K Shinozaki… - Journal of plant …, 2011 - Springer
The plant hormone abscisic acid (ABA) plays a pivotal role in a variety of developmental
processes and adaptive stress responses to environmental stimuli in plants. Cellular …

The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV‐B light, drought and cold stress responses

J Kilian, D Whitehead, J Horak, D Wanke… - The Plant …, 2007 - Wiley Online Library
The tolerance responses of plants to many abiotic stresses are conjectured to be controlled
by complex gene networks. In the frame of the AtGenExpress project a comprehensive …

Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function

I Ciolkowski, D Wanke, RP Birkenbihl… - Plant molecular …, 2008 - Springer
WRKY transcription factors have been shown to play a major role in regulating, both
positively and negatively, the plant defense transcriptome. Nearly all studied WRKY factors …

Genome-wide analysis of ABA-responsive elements ABRE and CE3 reveals divergent patterns in Arabidopsis and rice

JL Gómez-Porras, DM Riaño-Pachón, I Dreyer… - BMC genomics, 2007 - Springer
Background In plants, complex regulatory mechanisms are at the core of physiological and
developmental processes. The phytohormone abscisic acid (ABA) is involved in the …

The Arabidopsis GAGA-binding factor basic pentacysteine6 recruits the polycomb-repressive complex1 component like heterochromatin protein1 to GAGA DNA motifs

A Hecker, LH Brand, S Peter, N Simoncello… - Plant …, 2015 - academic.oup.com
Polycomb-repressive complexes (PRCs) play key roles in development by repressing a
large number of genes involved in various functions. Much, however, remains to be …

Synthetic promoters capable of driving robust nuclear gene expression in the green alga Chlamydomonas reinhardtii

MA Scranton, JT Ostrand, DR Georgianna, SM Lofgren… - Algal research, 2016 - Elsevier
Algae have enormous potential as bio-factories for the efficient production of a wide array of
high-value products, and eventually as a source of renewable biofuels. However, tools for …

RAV1 mediates cytokinin signaling for regulating primary root growth in Arabidopsis

D Mandal, S Datta, G Raveendar, PK Mondal… - The Plant …, 2023 - Wiley Online Library
Root growth dynamics is an outcome of complex hormonal crosstalk. The primary root
meristem size, for example, is determined by antagonizing actions of cytokinin and auxin …

Heterogeneity of Arabidopsis core promoters revealed by high‐density TSS analysis

YY Yamamoto, T Yoshitsugu, T Sakurai… - The Plant …, 2009 - Wiley Online Library
Our limited understanding of plant promoters does not allow us to recognize any core
promoter elements for the majority of plant promoters. To understand the promoter …

BASIC PENTACYSTEINE Proteins Repress ABSCISIC ACID INSENSITIVE4 Expression via Direct Recruitment of the Polycomb-Repressive Complex 2 in …

Y Mu, M Zou, X Sun, B He, X Xu, Y Liu… - Plant and Cell …, 2017 - academic.oup.com
Plant transcription factors generally act in complex regulatory networks that function at
multiple levels to govern plant developmental programs. Dissection of the interconnections …

Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome

EA Rach, HY Yuan, WH Majoros, P Tomancak, U Ohler - Genome biology, 2009 - Springer
Background Transcription initiation is a key component in the regulation of gene expression.
mRNA 5'full-length sequencing techniques have enhanced our understanding of …