MegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing

NM Ghiasi, M Sadrosadati, H Mustafa… - 2024 ACM/IEEE 51st …, 2024 - ieeexplore.ieee.org
Metagenomics, the study of the genome sequences of diverse organisms in a common
environment, has led to significant advances in many fields. Since the species present in a …

SOT-MRAM-based approximate content addressable memory for DNA classification

A Shaban, TH Hou, M Suri - IEEE Transactions on Electron …, 2024 - ieeexplore.ieee.org
In this work, we propose an approximate content addressable memory (CAM) using a hybrid
CMOS-spin-transfer torque (STT)-spin-orbit–torque MRAM (SOT MRAM) cell for …

ViTAL: Vision TrAnsformer based low coverage SARS-CoV-2 lineage assignment

Z Jahshan, L Yavits - Bioinformatics, 2024 - academic.oup.com
Motivation Rapid spread of viral diseases such as Coronavirus disease 2019 (COVID-19)
highlights an urgent need for efficient surveillance of virus mutation and transmission …

GCOC: A Genome Classifier-On-Chip based on Similarity Search Content Addressable Memory

Y Harary, P Snapir, SS Tov, C Kruphman… - … Circuits and Systems, 2024 - ieeexplore.ieee.org
GCOC is a genome classification system-on-chip (SoC) that classifies genomes by k-mer
matching, an approach that divides a DNA query sequence into a set of short DNA …

FloatAP: Supporting High-Performance Floating-Point Arithmetic in Associative Processors

K Yang, JF Martínez - 2024 57th IEEE/ACM International …, 2024 - ieeexplore.ieee.org
Associative Processors (AP) enable in-situ, data-parallel computation in content-
addressable memories (CAM). In particular, arithmetic operations are accomplished via bit …

MetaStore: High-Performance Metagenomic Analysis via In-Storage Computing

NM Ghiasi, M Sadrosadati, H Mustafa… - arXiv preprint arXiv …, 2023 - arxiv.org
Metagenomics has led to significant advancements in many fields. Metagenomic analysis
commonly involves the key tasks of determining the species present in a sample and their …

DRAMA: Commodity DRAM based content addressable memory

L Yavits - IEEE Computer Architecture Letters, 2023 - ieeexplore.ieee.org
Fast parallel search capabilities on large datasets provided by content addressable
memories (CAM) are required across multiple application domains. However compared to …

MajorK: Majority based kmer matching in commodity DRAM

Z Jahshan, L Yavits - IEEE Computer Architecture Letters, 2024 - ieeexplore.ieee.org
Fast parallel search capabilities on large datasets are required across multiple application
domains. One such domain is genome analysis, which requires high-performance k mer …

Low-complexity Dual Voltage Level Circuitry For Voltage-Divider-Based Content-Addressable Memory (CAM) Based On Two Supply Voltages

O Caisaluisa, E Holguín… - 2024 IEEE Eighth Ecuador …, 2024 - ieeexplore.ieee.org
Content addressable memories have raised great interest involving the realm of Big Data
and Artificial Intelligence, along with the emerging non-volatile (eNV) technology magnetic …

Improving Reliability of STT-MRAM-Based Smart Material Implication

M Lanuzza, T Moposita - 2024 IEEE 24th International …, 2024 - ieeexplore.ieee.org
Logic-in-Memory (LIM) architectures, particularly those based on Spin-Transfer Torque
Magnetic Random-Access Memory (STT-MRAM), offer a promising solution to over-come …