[HTML][HTML] Clustering approaches to identifying gene expression patterns from DNA microarray data

JH Do, DK Choi - Molecules and cells, 2008 - Elsevier
The analysis of microarray data is essential for large amounts of gene expression data. In
this review we focus on clustering techniques. The biological rationale for this approach is …

Comparing the performance of biomedical clustering methods

C Wiwie, J Baumbach, R Röttger - Nature methods, 2015 - nature.com
Identifying groups of similar objects is a popular first step in biomedical data analysis, but it
is error-prone and impossible to perform manually. Many computational methods have been …

The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis

TC Mockler, TP Michael, HD Priest… - Cold Spring Harbor …, 2007 - symposium.cshlp.org
Abstract The DIURNAL project (http://diurnal. cgrb. oregonstate. edu/) provides a graphical
interface for mining and viewing diurnal and circadian microarray data for Arabidopsis …

Nucleoid-enriched proteomes in developing plastids and chloroplasts from maize leaves: a new conceptual framework for nucleoid functions

W Majeran, G Friso, Y Asakura, X Qu, M Huang… - Plant …, 2012 - academic.oup.com
Plastids contain multiple copies of the plastid chromosome, folded together with proteins
and RNA into nucleoids. The degree to which components of the plastid gene expression …

Structural and Metabolic Transitions of C4 Leaf Development and Differentiation Defined by Microscopy and Quantitative Proteomics in Maize

W Majeran, G Friso, L Ponnala, B Connolly… - The Plant …, 2010 - academic.oup.com
C4 grasses, such as maize (Zea mays), have high photosynthetic efficiency through
combined biochemical and structural adaptations. C4 photosynthesis is established along …

Large-scale label-free quantitative proteomics of the pea aphid-Buchnera symbiosis

A Poliakov, CW Russell, L Ponnala, HJ Hoops… - Molecular & Cellular …, 2011 - ASBMB
Many insects are nutritionally dependent on symbiotic microorganisms that have tiny
genomes and are housed in specialized host cells called bacteriocytes. The obligate …

Identification of a gene regulatory network necessary for the initiation of oligodendrocyte differentiation

VA Swiss, T Nguyen, J Dugas, A Ibrahim, B Barres… - PloS one, 2011 - journals.plos.org
Differentiation of oligodendrocyte progenitor cells (OPCs) into mature oligodendrocytes
requires extensive changes in gene expression, which are partly mediated by post …

Utility of Banff human organ transplant gene panel in human kidney transplant biopsies

RN Smith, IA Rosales, KT Tomaszewski… - …, 2023 - journals.lww.com
Background. Microarray transcript analysis of human renal transplantation biopsies has
successfully identified the many patterns of graft rejection. To evaluate an alternative, this …

Beyond text: Using arrays to represent and analyze ethnographic data

CM Abramson, D Dohan - Sociological methodology, 2015 - journals.sagepub.com
Recent methodological debates in sociology have focused on how data and analyses might
be made more open and accessible, how the process of theorizing and knowledge …

Combining neural networks and ARIMA models for hourly temperature forecast

HS Hippert, CE Pedreira… - Proceedings of the IEEE …, 2000 - ieeexplore.ieee.org
This paper proposes a hybrid forecasting system that combines linear models and multilayer
neural networks to forecast hourly temperatures based on the past observed temperatures …