[HTML][HTML] Clustering approaches to identifying gene expression patterns from DNA microarray data
JH Do, DK Choi - Molecules and cells, 2008 - Elsevier
The analysis of microarray data is essential for large amounts of gene expression data. In
this review we focus on clustering techniques. The biological rationale for this approach is …
this review we focus on clustering techniques. The biological rationale for this approach is …
Comparing the performance of biomedical clustering methods
C Wiwie, J Baumbach, R Röttger - Nature methods, 2015 - nature.com
Identifying groups of similar objects is a popular first step in biomedical data analysis, but it
is error-prone and impossible to perform manually. Many computational methods have been …
is error-prone and impossible to perform manually. Many computational methods have been …
The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis
Abstract The DIURNAL project (http://diurnal. cgrb. oregonstate. edu/) provides a graphical
interface for mining and viewing diurnal and circadian microarray data for Arabidopsis …
interface for mining and viewing diurnal and circadian microarray data for Arabidopsis …
Nucleoid-enriched proteomes in developing plastids and chloroplasts from maize leaves: a new conceptual framework for nucleoid functions
Plastids contain multiple copies of the plastid chromosome, folded together with proteins
and RNA into nucleoids. The degree to which components of the plastid gene expression …
and RNA into nucleoids. The degree to which components of the plastid gene expression …
Structural and Metabolic Transitions of C4 Leaf Development and Differentiation Defined by Microscopy and Quantitative Proteomics in Maize
C4 grasses, such as maize (Zea mays), have high photosynthetic efficiency through
combined biochemical and structural adaptations. C4 photosynthesis is established along …
combined biochemical and structural adaptations. C4 photosynthesis is established along …
Large-scale label-free quantitative proteomics of the pea aphid-Buchnera symbiosis
A Poliakov, CW Russell, L Ponnala, HJ Hoops… - Molecular & Cellular …, 2011 - ASBMB
Many insects are nutritionally dependent on symbiotic microorganisms that have tiny
genomes and are housed in specialized host cells called bacteriocytes. The obligate …
genomes and are housed in specialized host cells called bacteriocytes. The obligate …
Identification of a gene regulatory network necessary for the initiation of oligodendrocyte differentiation
VA Swiss, T Nguyen, J Dugas, A Ibrahim, B Barres… - PloS one, 2011 - journals.plos.org
Differentiation of oligodendrocyte progenitor cells (OPCs) into mature oligodendrocytes
requires extensive changes in gene expression, which are partly mediated by post …
requires extensive changes in gene expression, which are partly mediated by post …
Utility of Banff human organ transplant gene panel in human kidney transplant biopsies
RN Smith, IA Rosales, KT Tomaszewski… - …, 2023 - journals.lww.com
Background. Microarray transcript analysis of human renal transplantation biopsies has
successfully identified the many patterns of graft rejection. To evaluate an alternative, this …
successfully identified the many patterns of graft rejection. To evaluate an alternative, this …
Beyond text: Using arrays to represent and analyze ethnographic data
CM Abramson, D Dohan - Sociological methodology, 2015 - journals.sagepub.com
Recent methodological debates in sociology have focused on how data and analyses might
be made more open and accessible, how the process of theorizing and knowledge …
be made more open and accessible, how the process of theorizing and knowledge …
Combining neural networks and ARIMA models for hourly temperature forecast
HS Hippert, CE Pedreira… - Proceedings of the IEEE …, 2000 - ieeexplore.ieee.org
This paper proposes a hybrid forecasting system that combines linear models and multilayer
neural networks to forecast hourly temperatures based on the past observed temperatures …
neural networks to forecast hourly temperatures based on the past observed temperatures …