HIV protease and integrase empirical substitution models of evolution: protein-specific models outperform generalist models
R Del Amparo, M Arenas - Genes, 2021 - mdpi.com
Diverse phylogenetic methods require a substitution model of evolution that should mimic,
as accurately as possible, the real substitution process. At the protein level, empirical …
as accurately as possible, the real substitution process. At the protein level, empirical …
MtOrt: an empirical mitochondrial amino acid substitution model for evolutionary studies of Orthoptera insects
H Chang, Y Nie, N Zhang, X Zhang, H Sun… - BMC Evolutionary …, 2020 - Springer
Background Amino acid substitution models play an important role in inferring phylogenies
from proteins. Although different amino acid substitution models have been proposed, only a …
from proteins. Although different amino acid substitution models have been proposed, only a …
Simulation data for the estimation of numerical constants for approximating pairwise evolutionary distances between amino acid sequences
T Bigot, J Guglielmini, A Criscuolo - Data in brief, 2019 - Elsevier
Estimating the number of substitution events per site that have occurred during the evolution
of a pair of amino acid sequences is a common task in phylogenetics and comparative …
of a pair of amino acid sequences is a common task in phylogenetics and comparative …
A protein alignment partitioning method for protein phylogenetic inference
TK Le, VS Le - 2020 RIVF International Conference on …, 2020 - ieeexplore.ieee.org
Phylogenetic trees inferred from protein sequences are strongly affected by amino acid
evolutionary models. Choosing proper models are needed to account for the heterogeneity …
evolutionary models. Choosing proper models are needed to account for the heterogeneity …