Surface proteins of gram-positive bacteria and mechanisms of their targeting to the cell wall envelope

WW Navarre, O Schneewind - Microbiology and molecular biology …, 1999 - Am Soc Microbiol
The cell wall envelope of gram-positive bacteria is a macromolecular, exoskeletal organelle
that is assembled and turned over at designated sites. The cell wall also functions as a …

Superantigen recognition and interactions: functions, mechanisms and applications

AM Deacy, SKE Gan, JP Derrick - Frontiers in Immunology, 2021 - frontiersin.org
Superantigens are unconventional antigens which recognise immune receptors outside
their usual recognition sites eg complementary determining regions (CDRs), to elicit a …

All About Albumin: Biochemistry, Genetics, and Medical Applications. Theodore Peters, Jr. San Diego, CA: Academic Press, 1996, 432 pp, $85.00. ISBN 0-12-552110 …

E Azzazy, RH Christenson - 1997 - academic.oup.com
Albumin, the most abundant plasma protein, is among the most studied of all proteins, being
important from clinical monitoring, physiological, and therapeutic perspectives. This unique …

FLIP: Benchmark tasks in fitness landscape inference for proteins

C Dallago, J Mou, KE Johnston, BJ Wittmann… - bioRxiv, 2021 - biorxiv.org
Abstract Machine learning could enable an unprecedented level of control in protein
engineering for therapeutic and industrial applications. Critical to its use in designing …

Adaptation in protein fitness landscapes is facilitated by indirect paths

NC Wu, L Dai, CA Olson, JO Lloyd-Smith, R Sun - Elife, 2016 - elifesciences.org
The structure of fitness landscapes is critical for understanding adaptive protein evolution.
Previous empirical studies on fitness landscapes were confined to either the neighborhood …

A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G

AM Gronenborn, DR Filpula, NZ Essig, A Achari… - Science, 1991 - science.org
The high-resolution three-dimensional structure of a single immunoglobulin binding domain
(B1, which comprises 56 residues including the NH2-terminal Met) of protein G from group G …

Crystal structure of the C2 fragment of streptococcal protein G in complex with the Fc domain of human IgG

AE Sauer-Eriksson, GJ Kleywegt, M Uhlén, TA Jones - Structure, 1995 - cell.com
Background: Streptococcal protein G comprises two or three domains that bind to the
constant Fc region of most mammalian immunoglobulin Gs (IgGs). Protein G is functionally …

An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells

T Bürckstümmer, KL Bennett, A Preradovic, G Schütze… - Nature …, 2006 - nature.com
Tandem affinity purification (TAP) is a generic two-step affinity purification protocol that
enables the isolation of protein complexes under close-to-physiological conditions for …

Peer: a comprehensive and multi-task benchmark for protein sequence understanding

M Xu, Z Zhang, J Lu, Z Zhu, Y Zhang… - Advances in …, 2022 - proceedings.neurips.cc
We are now witnessing significant progress of deep learning methods in a variety of tasks
(or datasets) of proteins. However, there is a lack of a standard benchmark to evaluate the …

A knowledge-based energy function for protein− ligand, protein− protein, and protein− DNA complexes

C Zhang, S Liu, Q Zhu, Y Zhou - Journal of medicinal chemistry, 2005 - ACS Publications
We developed a knowledge-based statistical energy function for protein− ligand, protein−
protein, and protein− DNA complexes by using 19 atom types and ad istance-scale f inite i …