Some remarks on protein attribute prediction and pseudo amino acid composition
KC Chou - Journal of theoretical biology, 2011 - Elsevier
With the accomplishment of human genome sequencing, the number of sequence-known
proteins has increased explosively. In contrast, the pace is much slower in determining their …
proteins has increased explosively. In contrast, the pace is much slower in determining their …
Computational methods for prediction of protein–RNA interactions
T Puton, L Kozlowski, I Tuszynska, K Rother… - Journal of structural …, 2012 - Elsevier
Understanding the molecular mechanism of protein–RNA recognition and complex
formation is a major challenge in structural biology. Unfortunately, the experimental …
formation is a major challenge in structural biology. Unfortunately, the experimental …
Predicting RNA-protein interactions using only sequence information
Background RNA-protein interactions (RPIs) play important roles in a wide variety of cellular
processes, ranging from transcriptional and post-transcriptional regulation of gene …
processes, ranging from transcriptional and post-transcriptional regulation of gene …
Local-DPP: An improved DNA-binding protein prediction method by exploring local evolutionary information
Increased knowledge of DNA-binding proteins would enhance our understanding of protein
functions in cellular biological processes. To handle the explosive growth of protein …
functions in cellular biological processes. To handle the explosive growth of protein …
[HTML][HTML] Cell-PLoc 2.0: an improved package of web-servers for predicting subcellular localization of proteins in various organisms
KC Chou, HB Shen - Natural Science, 2010 - scirp.org
Cell-PLoc 2.0 is a package of web-servers evolved from Cell-PLoc (Chou, KC & Shen, HB,
Nature Protocols, 2008, 2: 153-162) by a top-down approach to improve the power for …
Nature Protocols, 2008, 2: 153-162) by a top-down approach to improve the power for …
iDNA-Prot: identification of DNA binding proteins using random forest with grey model
DNA-binding proteins play crucial roles in various cellular processes. Developing high
throughput tools for rapidly and effectively identifying DNA-binding proteins is one of the …
throughput tools for rapidly and effectively identifying DNA-binding proteins is one of the …
DPP-PseAAC: a DNA-binding protein prediction model using Chou's general PseAAC
Abstract A DNA-binding protein (DNA-BP) is a protein that can bind and interact with a DNA.
Identification of DNA-BPs using experimental methods is expensive as well as time …
Identification of DNA-BPs using experimental methods is expensive as well as time …
Selection by prediction with conformal p-values
Decision making or scientific discovery pipelines such as job hiring and drug discovery often
involve multiple stages: before any resource-intensive step, there is often an initial screening …
involve multiple stages: before any resource-intensive step, there is often an initial screening …
Sequence based prediction of DNA-binding proteins based on hybrid feature selection using random forest and Gaussian naive Bayes
W Lou, X Wang, F Chen, Y Chen, B Jiang, H Zhang - PloS one, 2014 - journals.plos.org
Developing an efficient method for determination of the DNA-binding proteins, due to their
vital roles in gene regulation, is becoming highly desired since it would be invaluable to …
vital roles in gene regulation, is becoming highly desired since it would be invaluable to …
AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties
KK Kandaswamy, KC Chou, T Martinetz… - Journal of theoretical …, 2011 - Elsevier
Some creatures living in extremely low temperatures can produce some special materials
called “antifreeze proteins”(AFPs), which can prevent the cell and body fluids from freezing …
called “antifreeze proteins”(AFPs), which can prevent the cell and body fluids from freezing …