Protein export through the bacterial Sec pathway

A Tsirigotaki, J De Geyter, A Economou… - Nature Reviews …, 2017 - nature.com
The general secretory (Sec) pathway comprises an essential, ubiquitous and universal
export machinery for most proteins that integrate into, or translocate through, the plasma …

Signal recognition particle: an essential protein-targeting machine

D Akopian, K Shen, X Zhang… - Annual review of …, 2013 - annualreviews.org
The signal recognition particle (SRP) and its receptor compose a universally conserved and
essential cellular machinery that couples the synthesis of nascent proteins to their proper …

Combining an elastic network with a coarse-grained molecular force field: structure, dynamics, and intermolecular recognition

X Periole, M Cavalli, SJ Marrink… - Journal of chemical …, 2009 - ACS Publications
Structure-based and physics-based coarse-grained molecular force fields have become
attractive approaches to gain mechanistic insight into the function of large biomolecular …

X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in …

CD Putnam, M Hammel, GL Hura… - Quarterly reviews of …, 2007 - cambridge.org
Crystallography supplies unparalleled detail on structural information critical for mechanistic
analyses; however, it is restricted to describing low energy conformations of …

[HTML][HTML] Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics

LG Trabuco, E Villa, K Mitra, J Frank, K Schulten - Structure, 2008 - cell.com
A novel method to flexibly fit atomic structures into electron microscopy (EM) maps using
molecular dynamics simulations is presented. The simulations incorporate the EM data as …

Protein translocation across the eukaryotic endoplasmic reticulum and bacterial plasma membranes

TA Rapoport - Nature, 2007 - nature.com
A decisive step in the biosynthesis of many proteins is their partial or complete translocation
across the eukaryotic endoplasmic reticulum membrane or the prokaryotic plasma …

In and out of the ER: protein folding, quality control, degradation, and related human diseases

DN Hebert, M Molinari - Physiological reviews, 2007 - journals.physiology.org
A substantial fraction of eukaryotic gene products are synthesized by ribosomes attached at
the cytosolic face of the endoplasmic reticulum (ER) membrane. These polypeptides enter …

[HTML][HTML] Sec-and Tat-mediated protein secretion across the bacterial cytoplasmic membrane—distinct translocases and mechanisms

P Natale, T Brüser, AJM Driessen - Biochimica et Biophysica Acta (BBA) …, 2008 - Elsevier
In bacteria, two major pathways exist to secrete proteins across the cytoplasmic membrane.
The general Secretion route, termed Sec-pathway, catalyzes the transmembrane …

Protein translocation across the bacterial cytoplasmic membrane

AJM Driessen, N Nouwen - Annu. Rev. Biochem., 2008 - annualreviews.org
About 25% to 30% of the bacterial proteins function in the cell envelope or outside of the
cell. These proteins are synthesized in the cytosol, and the vast majority is recognized as a …

Membrane-protein topology

G von Heijne - Nature reviews Molecular cell biology, 2006 - nature.com
In the world of membrane proteins, topology defines an important halfway house between
the amino-acid sequence and the fully folded three-dimensional structure. Although the …