Polymer translocation: the first two decades and the recent diversification
Probably no other field of statistical physics at the borderline of soft matter and biological
physics has caused such a flurry of papers as polymer translocation since the 1994 …
physics has caused such a flurry of papers as polymer translocation since the 1994 …
Single-polymer dynamics under constraints: scaling theory and computer experiment
A Milchev - Journal of Physics: Condensed Matter, 2011 - iopscience.iop.org
The relaxation, diffusion and translocation dynamics of single linear polymer chains in
confinement is briefly reviewed with emphasis on the comparison between theoretical …
confinement is briefly reviewed with emphasis on the comparison between theoretical …
Deciphering ionic current signatures of DNA transport through a nanopore
A Aksimentiev - Nanoscale, 2010 - pubs.rsc.org
Within just a decade from the pioneering work demonstrating the utility of nanopores for
molecular sensing, nanopores have emerged as versatile systems for single-molecule …
molecular sensing, nanopores have emerged as versatile systems for single-molecule …
Influence of polymer-pore interactions on translocation
We investigate the influence of polymer-pore interactions on the translocation dynamics
using Langevin dynamics simulations. An attractive interaction can greatly improve the …
using Langevin dynamics simulations. An attractive interaction can greatly improve the …
Langevin dynamics simulations of polymer translocation through nanopores
We investigate the dynamics of polymer translocation through a nanopore using two-
dimensional Langevin dynamics simulations. In the absence of an external driving force, we …
dimensional Langevin dynamics simulations. In the absence of an external driving force, we …
Exploring transmembrane transport through α-hemolysin with grid-steered molecular dynamics
DB Wells, V Abramkina, A Aksimentiev - The Journal of chemical …, 2007 - pubs.aip.org
The transport of biomolecules across cell boundaries is central to cellular function. While
structures of many membrane channels are known, the permeation mechanism is known …
structures of many membrane channels are known, the permeation mechanism is known …
Sequence dependence of DNA translocation through a nanopore
We investigate the dynamics of DNA translocation through a nanopore using 2D Langevin
dynamics simulations, focusing on the dependence of the translocation dynamics on the …
dynamics simulations, focusing on the dependence of the translocation dynamics on the …
Modeling the separation of macromolecules: A review of current computer simulation methods
Abstract Theory and numerical simulations play a major role in the development of improved
and novel separation methods. In some cases, computer simulations predict counterintuitive …
and novel separation methods. In some cases, computer simulations predict counterintuitive …
Driven polymer translocation through nanopores: Slow-vs.-fast dynamics
We investigate the dynamics of polymer translocation through nanopores under external
driving by 3D Langevin Dynamics simulations, focusing on the scaling of the average …
driving by 3D Langevin Dynamics simulations, focusing on the scaling of the average …
Polymer translocation through a nanopore: A showcase of anomalous diffusion
JLA Dubbeldam, A Milchev, VG Rostiashvili… - Physical Review E …, 2007 - APS
The translocation dynamics of a polymer chain through a nanopore in the absence of an
external driving force is analyzed by means of scaling arguments, fractional calculus, and …
external driving force is analyzed by means of scaling arguments, fractional calculus, and …