Homology modelling has matured into an important technique in structural biology,
significantly contributing to narrowing the gap between known protein sequences and …

Protein-protein docking is a useful tool for modeling the structures of protein complexes that
have yet to be experimentally determined. Understanding the structures of protein …

The development of fast Fourier transform (FFT) algorithms enabled the sampling of billions
of complex conformations and thus revolutionized protein-protein docking. FFT-based …

Physical interactions of proteins play key functional roles in many important cellular
processes. To understand molecular mechanisms of such functions, it is crucial to determine …

Computational protein–protein docking is one of the most intensively studied topics in
structural bioinformatics. The field has made substantial progress through over three …

Motivation Many important cellular processes involve physical interactions of proteins.
Therefore, determining protein quaternary structures provide critical insights for …

Numerous biological processes in a cell are carried out by protein complexes. To
understand the molecular mechanisms of such processes, it is crucial to know the …

Proteins are key components in many processes in living cells, and physical interactions
with other proteins and nucleic acids often form key parts of their functions. In many cases …

Quality Assessment (QA) plays an important role in protein structure prediction. Traditional
multimodel QA method usually suffer from searching databases or comparing with other …

The template-based approach has been essential for achieving high-quality models in the
recent rounds of blind protein-protein docking competition CAPRI (Critical Assessment of …