Suppressive composts: microbial ecology links between abiotic environments and healthy plants

Y Hadar, KK Papadopoulou - Annual review of phytopathology, 2012 - annualreviews.org
Suppressive compost provides an environment in which plant disease development is
reduced, even in the presence of a pathogen and a susceptible host. Despite the numerous …

Metagenomics and novel gene discovery: promise and potential for novel therapeutics

EP Culligan, RD Sleator, JR Marchesi, C Hill - Virulence, 2014 - Taylor & Francis
Metagenomics provides a means of assessing the total genetic pool of all the microbes in a
particular environment, in a culture-independent manner. It has revealed unprecedented …

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

YW Wu, YH Tang, SG Tringe, BA Simmons, SW Singer - Microbiome, 2014 - Springer
Background Recovering individual genomes from metagenomic datasets allows access to
uncultivated microbial populations that may have important roles in natural and engineered …

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

Y Yin, X Mao, J Yang, X Chen, F Mao… - Nucleic acids …, 2012 - academic.oup.com
Carbohydrate-active enzymes (CAZymes) are very important to the biotech industry,
particularly the emerging biofuel industry because CAZymes are responsible for the …

Functional diversity within the simple gut microbiota of the honey bee

P Engel, VG Martinson… - Proceedings of the …, 2012 - National Acad Sciences
Animals living in social communities typically harbor a characteristic gut microbiota
important for nutrition and pathogen defense. Accordingly, in the gut of the honey bee, Apis …

Extensive microbial and functional diversity within the chicken cecal microbiome

MJ Sergeant, C Constantinidou, TA Cogan… - PloS one, 2014 - journals.plos.org
Chickens are major source of food and protein worldwide. Feed conversion and the health
of chickens relies on the largely unexplored complex microbial community that inhabits the …

Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria

BJ Baker, CS Lazar, AP Teske, GJ Dick - Microbiome, 2015 - Springer
Background Estuaries are among the most productive habitats on the planet. Bacteria in
estuary sediments control the turnover of organic carbon and the cycling of nitrogen and …

[PDF][PDF] Enzymatic hydrolysis of cellulosic biomass

B Yang, Z Dai, SY Ding, CE Wyman - Biofuels, 2011 - academia.edu
Biological conversion of cellulosic biomass to fuels and chemicals offers the high yields to
products vital to economic success and the potential for very low costs. Enzymatic hydrolysis …

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

OU Mason, TC Hazen, S Borglin, PSG Chain… - The ISME …, 2012 - academic.oup.com
Abstract The Deepwater Horizon oil spill in the Gulf of Mexico resulted in a deep-sea
hydrocarbon plume that caused a shift in the indigenous microbial community composition …

Metagenomic analysis of microbial consortia enriched from compost: new insights into the role of Actinobacteria in lignocellulose decomposition

C Wang, D Dong, H Wang, K Müller, Y Qin… - Biotechnology for …, 2016 - Springer
Background Compost habitats sustain a vast ensemble of microbes specializing in the
degradation of lignocellulosic plant materials and are thus important both for their roles in …