The Ecology of Acidobacteria: Moving beyond Genes and Genomes

AM Kielak, CC Barreto, GA Kowalchuk… - Frontiers in …, 2016 - frontiersin.org
The phylum Acidobacteria is one of the most widespread and abundant on the planet, yet
remarkably our knowledge of the role of these diverse organisms in the functioning of …

Present and future of culturing bacteria

J Overmann, B Abt, J Sikorski - Annual review of microbiology, 2017 - annualreviews.org
The cultivation of bacteria is highly biased toward a few phylogenetic groups. Many of the
currently underexplored bacterial lineages likely have novel biosynthetic pathways and …

Responses of soil bacterial and fungal communities to extreme desiccation and rewetting

RL Barnard, CA Osborne, MK Firestone - The ISME journal, 2013 - academic.oup.com
The microbial response to summer desiccation reflects adaptation strategies, setting the
stage for a large rainfall-induced soil CO2 pulse upon rewetting, an important component of …

[HTML][HTML] Composition, diversity and abundance of gut microbiome in prediabetes and type 2 diabetes

SM Lambeth, T Carson, J Lowe, T Ramaraj… - Journal of diabetes …, 2015 - ncbi.nlm.nih.gov
Association between type 2 diabetes (T2DM) and compositional changes in the gut micro
biota is established, however little is known about the dysbiosis in early stages of …

MEGAN analysis of metagenomic data

DH Huson, AF Auch, J Qi, SC Schuster - Genome research, 2007 - genome.cshlp.org
Metagenomics is the study of the genomic content of a sample of organisms obtained from a
common habitat using targeted or random sequencing. Goals include understanding the …

Soil viruses are underexplored players in ecosystem carbon processing

G Trubl, HB Jang, S Roux, JB Emerson, N Solonenko… - …, 2018 - Am Soc Microbiol
Rapidly thawing permafrost harbors∼ 30 to 50% of global soil carbon, and the fate of this
carbon remains unknown. Microorganisms will play a central role in its fate, and their viruses …

Metagenomics: application of genomics to uncultured microorganisms

J Handelsman - Microbiology and molecular biology reviews, 2004 - Am Soc Microbiol
Metagenomics (also referred to as environmental and community genomics) is the genomic
analysis of microorganisms by direct extraction and cloning of DNA from an assemblage of …

Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes

PH Janssen - Applied and environmental microbiology, 2006 - Am Soc Microbiol
In 1909, H. Joel Conn (25) expressed the hope that methods would soon be at hand by
which the significance of the different bacteria present in any soil could be determined …

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

RT Jones, MS Robeson, CL Lauber… - The ISME …, 2009 - academic.oup.com
Acidobacteria are ubiquitous and abundant members of soil bacterial communities.
However, an ecological understanding of this important phylum has remained elusive …

Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils

NL Ward, JF Challacombe, PH Janssen… - Applied and …, 2009 - Am Soc Microbiol
The complete genomes of three strains from the phylum Acidobacteria were compared.
Phylogenetic analysis placed them as a unique phylum. They share genomic traits with …