BIMSA: accelerating long sequence alignment using processing-in-memory
A Alonso-Marín, I Fernandez, Q Aguado-Puig… - …, 2024 - academic.oup.com
Motivation Recent advances in sequencing technologies have stressed the critical role of
sequence analysis algorithms and tools in genomics and healthcare research. In particular …
sequence analysis algorithms and tools in genomics and healthcare research. In particular …
Leveraging Difference Recurrence Relations for High-Performance GPU Genome Alignment
A Zeni, S Onken, MD Santambrogio… - Proceedings of the 2024 …, 2024 - dl.acm.org
Genome pairwise sequence alignment is one of the most computationally intensive
workloads in many genomic pipelines, often accounting for over 90% of the runtime of …
workloads in many genomic pipelines, often accounting for over 90% of the runtime of …
[HTML][HTML] Starlight: A kernel optimizer for GPU processing
Over the past few years, GPUs have found widespread adoption in many scientific domains,
offering notable performance and energy efficiency advantages compared to CPUs …
offering notable performance and energy efficiency advantages compared to CPUs …
FPGA and ASIC accelerators for genome data analysis
A Haghi - 2024 - upcommons.upc.edu
(English) The continuous progress of Moore's Law in improving single-threaded
performance (execution time) through clock frequency and process node improvements has …
performance (execution time) through clock frequency and process node improvements has …