[HTML][HTML] Principles for the design of multicellular engineered living systems

O Aydin, AP Passaro, R Raman, SE Spellicy… - APL …, 2022 - pubs.aip.org
Remarkable progress in bioengineering over the past two decades has enabled the
formulation of fundamental design principles for a variety of medical and non-medical …

Multicolor strategies for investigating clonal expansion and tissue plasticity

L Dumas, S Clavreul, F Michon, K Loulier - Cellular and Molecular Life …, 2022 - Springer
Understanding the generation of complexity in living organisms requires the use of lineage
tracing tools at a multicellular scale. In this review, we describe the different multicolor …

Input density tunes Kenyon cell sensory responses in the Drosophila mushroom body

M Ahmed, AE Rajagopalan, Y Pan, Y Li, DL Williams… - Current Biology, 2023 - cell.com
The ability to discriminate sensory stimuli with overlapping features is thought to arise in
brain structures called expansion layers, where neurons carrying information about sensory …

The molecular landscape of neural differentiation in the developing Drosophila brain revealed by targeted scRNA-seq and multi-informatic analysis

NS Michki, Y Li, K Sanjasaz, Y Zhao, FY Shen… - Cell reports, 2021 - cell.com
The Drosophila type II neuroblast lineages present an attractive model to investigate the
neurogenesis and differentiation process as they adapt to a process similar to that in the …

Clonal selection parallels between normal and cancer tissues

A Salavaty, E Azadian, SH Naik, PD Currie - Trends in Genetics, 2023 - cell.com
Clonal selection and drift drive both normal tissue and cancer development. However, the
biological mechanisms and environmental conditions underpinning these processes remain …

[HTML][HTML] Hacking brain development to test models of sensory coding

M Ahmed, AE Rajagopalan, Y Pan, Y Li, DL Williams… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Animals can discriminate myriad sensory stimuli but can also generalize from learned
experience. You can probably distinguish the favorite teas of your colleagues while still …

Towards a Comprehensive Optical Connectome at Single Synapse Resolution via Expansion Microscopy

MA Sneve, KD Piatkevich - Frontiers in Synaptic Neuroscience, 2022 - frontiersin.org
Mapping and determining the molecular identity of individual synapses is a crucial step
towards the comprehensive reconstruction of neuronal circuits. Throughout the history of …

Blind demixing methods for recovering dense neuronal morphology from barcode imaging data

S Chen, J Loper, P Zhou, L Paninski - PLoS Computational …, 2022 - journals.plos.org
Cellular barcoding methods offer the exciting possibility of 'infinite-pseudocolor'anatomical
reconstruction—ie, assigning each neuron its own random unique barcoded …

Unsupervised neural tracing in densely labeled multispectral brainbow images

B Duan, LA Walker, DH Roossien… - 2021 IEEE 18th …, 2021 - ieeexplore.ieee.org
Recent advances in imaging technologies for generating large quantities of high-resolution
3D images, especially multispectral labeling technology such as Brainbow, permits …

nGauge: Integrated and Extensible Neuron Morphology Analysis in Python

LA Walker, JS Williams, Y Li, DH Roossien, WJ Lee… - Neuroinformatics, 2022 - Springer
The study of neuron morphology requires robust and comprehensive methods to quantify
the differences between neurons of different subtypes and animal species. Several software …