The expanding role of DNA barcodes: Indispensable tools for ecology, evolution, and conservation

MR Gostel, WJ Kress - Diversity, 2022 - mdpi.com
DNA barcoding has transformed the fields of ecology, evolution, and conservation by
providing a rapid and effective tool for species identification. The growth of DNA barcodes as …

Improving bee health through genomics

CM Grozinger, A Zayed - Nature Reviews Genetics, 2020 - nature.com
Declines in bee populations across the world threaten food security and ecosystem function.
It is currently not possible to routinely predict which specific stressors lead to declines in …

Over 2.5 million COI sequences in GenBank and growing

TM Porter, M Hajibabaei - PloS one, 2018 - journals.plos.org
The increasing popularity of cytochrome c oxidase subunit 1 (COI) DNA metabarcoding
warrants a careful look at the underlying reference databases used to make high-throughput …

Meta‐fish‐lib: A generalised, dynamic DNA reference library pipeline for metabarcoding of fishes

RA Collins, G Trauzzi, KM Maltby… - Journal of Fish …, 2021 - Wiley Online Library
The accuracy and reliability of DNA metabarcoding analyses depend on the breadth and
quality of the reference libraries that underpin them. However, there are limited options …

Chronic stress and corticosterone exacerbate alcohol-induced tissue injury in the gut-liver-brain axis

PK Shukla, AS Meena, K Dalal, C Canelas, G Samak… - Scientific Reports, 2021 - nature.com
Alcohol use disorders are associated with altered stress responses, but the impact of stress
or stress hormones on alcohol-associated tissue injury remain unknown. We evaluated the …

[HTML][HTML] Long-term application of Swedish sewage sludge on farmland does not cause clear changes in the soil bacterial resistome

C Rutgersson, S Ebmeyer, SB Lassen… - Environment …, 2020 - Elsevier
The widespread practice of applying sewage sludge to arable land makes use of nutrients
indispensable for crops and reduces the need for inorganic fertilizer, however this …

Application of plant metabarcoding to identify diverse honeybee pollen forage along an urban–agricultural gradient

RT Richardson, TD Eaton, CH Lin, G Cherry… - Molecular …, 2021 - Wiley Online Library
Understanding animal foraging ecology requires large sample sizes spanning broad
environmental and temporal gradients. For pollinators, this has been hampered by the …

[HTML][HTML] Central role of intestinal epithelial glucocorticoid receptor in alcohol‐and corticosterone‐induced gut permeability and systemic response

PK Shukla, AS Meena, JF Pierre… - The FASEB Journal, 2021 - pmc.ncbi.nlm.nih.gov
Corticosterone, the stress hormone, exacerbates alcohol‐associated tissue injury, but the
mechanism involved is unknown. We examined the role of the glucocorticoid receptor (GR) …

COInr and mkCOInr: Building and customizing a nonredundant barcoding reference database from BOLD and NCBI using a semi‐automated pipeline

E Meglécz - Molecular Ecology Resources, 2023 - Wiley Online Library
Reference databases with wide taxonomic coverage are greatly needed in many fields of
biology, most particularly for the taxonomic assignment of metabarcoding sequences …

BAGS: An automated Barcode, Audit & Grade System for DNA barcode reference libraries

JT Fontes, PE Vieira, T Ekrem, P Soares, FO Costa - 2021 - Wiley Online Library
Biodiversity studies greatly benefit from molecular tools, such as DNA metabarcoding, which
provides an effective identification tool in biomonitoring and conservation programmes. The …