Structural insights into ribosome translocation

C Ling, DN Ermolenko - Wiley Interdisciplinary Reviews: RNA, 2016 - Wiley Online Library
During protein synthesis, tRNA and mRNA are translocated from the A to P to E sites of the
ribosome thus enabling the ribosome to translate one codon of mRNA after the other …

Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP

CE Carbone, AB Loveland, HB Gamper Jr… - Nature …, 2021 - nature.com
During translation, a conserved GTPase elongation factor—EF-G in bacteria or eEF2 in
eukaryotes—translocates tRNA and mRNA through the ribosome. EF-G has been proposed …

Cryo-EM of elongating ribosome with EF-Tu• GTP elucidates tRNA proofreading

AB Loveland, G Demo, AA Korostelev - Nature, 2020 - nature.com
Ribosomes accurately decode mRNA by proofreading each aminoacyl-tRNA that is
delivered by the elongation factor EF-Tu. To understand the molecular mechanism of this …

Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome

PD Abeyrathne, CS Koh, T Grant, N Grigorieff… - Elife, 2016 - elifesciences.org
Internal ribosome entry sites (IRESs) mediate cap-independent translation of viral mRNAs.
Using electron cryo-microscopy of a single specimen, we present five ribosome structures …

Structures of the human mitochondrial ribosome bound to EF-G1 reveal distinct features of mitochondrial translation elongation

RK Koripella, MR Sharma, K Bhargava… - Nature …, 2020 - nature.com
The mammalian mitochondrial ribosome (mitoribosome) and its associated translational
factors have evolved to accommodate greater participation of proteins in mitochondrial …

Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis

S Majumdar, A Emmerich, S Krakovka… - Nucleic acids …, 2023 - academic.oup.com
Giardia intestinalis is a protozoan parasite that causes diarrhea in humans. Using single-
particle cryo-electron microscopy, we have determined high-resolution structures of six …

GTP hydrolysis without an active site base: a unifying mechanism for Ras and related GTPases

AR Calixto, C Moreira, A Pabis, C Kötting… - Journal of the …, 2019 - ACS Publications
GTP hydrolysis is a biologically crucial reaction, being involved in regulating almost all
cellular processes. As a result, the enzymes that catalyze this reaction are among the most …

Selective translation by alternative bacterial ribosomes

YX Chen, Z Xu, X Ge, JY Hong… - Proceedings of the …, 2020 - National Acad Sciences
Alternative ribosome subunit proteins are prevalent in the genomes of diverse bacterial
species, but their functional significance is controversial. Attempts to study microbial …

Kinetic analysis suggests evolution of ribosome specificity in modern elongation factor-Tus from “generalist” ancestors

A De Tarafder, NP Parajuli, S Majumdar… - Molecular biology …, 2021 - academic.oup.com
It has been hypothesized that early enzymes are more promiscuous than their extant
orthologs. Whether or not this hypothesis applies to the translation machinery, the oldest …

Structures of the Staphylococcus aureus ribosome inhibited by fusidic acid and fusidic acid cyclopentane

A González-López, DSD Larsson, RK Koripella… - Scientific reports, 2024 - nature.com
The antibiotic fusidic acid (FA) is used to treat Staphylococcus aureus infections. It inhibits
protein synthesis by binding to elongation factor G (EF-G) and preventing its release from …