High-throughput and single-cell T cell receptor sequencing technologies

JA Pai, AT Satpathy - Nature methods, 2021 - nature.com
T cells express T cell receptors (TCRs) composed of somatically recombined TCRα and
TCRβ chains, which mediate recognition of major histocompatibility complex (MHC)–antigen …

T-cell receptor repertoire sequencing and its applications: focus on infectious diseases and cancer

L Mazzotti, A Gaimari, S Bravaccini, R Maltoni… - International journal of …, 2022 - mdpi.com
The immune system is a dynamic feature of each individual and a footprint of our unique
internal and external exposures. Indeed, the type and level of exposure to physical and …

Longitudinal analysis reveals age-related changes in the T cell receptor repertoire of human T cell subsets

X Sun, T Nguyen, A Achour, A Ko… - The Journal of …, 2022 - Am Soc Clin Investig
A diverse T cell receptor (TCR) repertoire is essential for protection against a variety of
pathogens, and TCR repertoire size is believed to decline with age. However, the precise …

Detection of enriched T cell epitope specificity in full T cell receptor sequence repertoires

S Gielis, P Moris, W Bittremieux, N De Neuter… - Frontiers in …, 2019 - frontiersin.org
High-throughput T cell receptor (TCR) sequencing allows the characterization of an
individual's TCR repertoire and directly queries their immune state. However, it remains a …

Analysis of gene expression and TCR/B cell receptor profiling of immune cells in primary Sjögren's syndrome by single-cell sequencing

X Hou, X Hong, M Ou, S Meng, T Wang… - The Journal of …, 2022 - journals.aai.org
Primary Sjögren's syndrome (pSS) is a chronic autoimmune disease that is estimated to
affect 35 million people worldwide and is characterized by lymphocytic infiltration, elevated …

Single T Cell Sequencing Demonstrates the Functional Role of αβ TCR Pairing in Cell Lineage and Antigen Specificity

JA Carter, JB Preall, K Grigaityte, SJ Goldfless… - Frontiers in …, 2019 - frontiersin.org
Although structural studies of individual T cell receptors (TCRs) have revealed important
roles for both the α and β chain in directing MHC and antigen recognition, repertoire-level …

[HTML][HTML] Peptide–MHC class I tetramers can fail to detect relevant functional T cell clonotypes and underestimate antigen-reactive T cell populations

C Rius, M Attaf, K Tungatt, V Bianchi… - The Journal of …, 2018 - journals.aai.org
Abstract Peptide-MHC (pMHC) multimers, usually used as streptavidin-based tetramers,
have transformed the study of Ag-specific T cells by allowing direct detection, phenotyping …

Machine learning approaches to TCR repertoire analysis

Y Katayama, R Yokota, T Akiyama… - Frontiers in …, 2022 - frontiersin.org
Sparked by the development of genome sequencing technology, the quantity and quality of
data handled in immunological research have been changing dramatically. Various data …

Determinants governing T cell receptor α/β-chain pairing in repertoire formation of identical twins

H Tanno, TM Gould, JR McDaniel… - Proceedings of the …, 2020 - National Acad Sciences
The T cell repertoire in each individual includes T cell receptors (TCRs) of enormous
sequence diversity through the pairing of diverse TCR α-and β-chains, each generated by …

[HTML][HTML] T cell receptor sequencing in autoimmunity

AM Mitchell, AW Michels - … of life sciences (Westlake Village, Calif.), 2020 - ncbi.nlm.nih.gov
T cells are an integral component of the adaptive immune response via the recognition of
peptides by the cell surface-expressed T cell receptor (TCR). Rearrangement of the TCR …