Theory and simulation of the ultrafast double-bond isomerization of biological chromophores

S Gozem, HL Luk, I Schapiro, M Olivucci - Chemical reviews, 2017 - ACS Publications
Ultrafast processes in light-absorbing proteins have been implicated in the primary step in
the light-to-energy conversion and the initialization of photoresponsive biological functions …

Probing structure and reaction dynamics of proteins using time-resolved resonance Raman spectroscopy

D Buhrke, P Hildebrandt - Chemical reviews, 2019 - ACS Publications
The mechanistic understanding of protein functions requires insight into the structural and
reaction dynamics. To elucidate these processes, a variety of experimental approaches are …

A protonation-coupled feedback mechanism controls the signalling process in bathy phytochromes

F Velazquez Escobar, P Piwowarski, J Salewski… - Nature …, 2015 - nature.com
Phytochromes are bimodal photoswitches composed of a photosensor and an output
module. Photoactivation of the sensor is initiated by a double bond isomerization of the …

Protonation-dependent structural heterogeneity in the chromophore binding site of cyanobacterial phytochrome Cph1

F Velazquez Escobar, C Lang, A Takiden… - The journal of …, 2017 - ACS Publications
Phytochromes are biological red/far-red light sensors found in many organisms.
Photoisomerization of the linear methine-bridged tetrapyrrole triggers transient proton …

Resonant Vibrational Enhancement of Downhill Energy Transfer in the C-Phycocyanin Chromophore Dimer

S Sohoni, PJE Wu, Q Shen, LT Lloyd… - The Journal of …, 2024 - ACS Publications
Energy transfer between electronically coupled photosynthetic light-harvesting antenna
pigments is frequently assisted by protein and chromophore nuclear motion. This energy …

Photoconversion mechanism of the second GAF domain of cyanobacteriochrome AnPixJ and the cofactor structure of its green-absorbing state

F Velazquez Escobar, T Utesch, R Narikawa… - Biochemistry, 2013 - ACS Publications
Cyanobacteriochromes are members of the phytochrome superfamily. In contrast to classical
phytochromes, these small photosensors display a considerable variability of electronic …

Structure of the biliverdin cofactor in the Pfr state of bathy and prototypical phytochromes

J Salewski, FV Escobar, S Kaminski… - Journal of Biological …, 2013 - ASBMB
Phytochromes act as photoswitches between the red-and far-red absorbing parent states of
phytochromes (Pr and Pfr). Plant phytochromes display an additional thermal conversion …

Unusual spectral properties of bacteriophytochrome Agp2 result from a deprotonation of the chromophore in the red-absorbing form Pr

B Zienicke, I Molina, R Glenz, P Singer, D Ehmer… - Journal of Biological …, 2013 - ASBMB
Phytochromes are widely distributed photoreceptors with a bilin chromophore that undergo
a typical reversible photoconversion between the two spectrally different forms, Pr and Pfr …

QM/MM benchmarking of cyanobacteriochrome Slr1393g3 absorption spectra

C Wiebeler, I Schapiro - Molecules, 2019 - mdpi.com
Cyanobacteriochromes are compact and spectrally diverse photoreceptor proteins that are
promising candidates for biotechnological applications. Computational studies can …

Structural insights into photoactivation and signalling in plant phytochromes

S Nagano, K Guan, SM Shenkutie, C Feiler, M Weiss… - Nature Plants, 2020 - nature.com
Plant phytochromes are red/far-red photochromic photoreceptors that act as master
regulators of development, controlling the expression of thousands of genes. Here, we …