Cross-linking mass spectrometry for investigating protein conformations and protein–protein interactions─ a method for all seasons

L Piersimoni, PL Kastritis, C Arlt, A Sinz - Chemical Reviews, 2021 - ACS Publications
Mass spectrometry (MS) has become one of the key technologies of structural biology. In this
review, the contributions of chemical cross-linking combined with mass spectrometry (XL …

Cross‐linking/mass spectrometry for studying protein structures and protein–protein interactions: where are we now and where should we go from here?

A Sinz - Angewandte Chemie International Edition, 2018 - Wiley Online Library
Structural mass spectrometry (MS) is gaining increasing importance for deriving valuable
three‐dimensional structural information on proteins and protein complexes, and it …

The role of electron transfer dissociation in modern proteomics

NM Riley, JJ Coon - Analytical Chemistry, 2018 - ACS Publications
(MS) and MS-driven proteomics have continued to develop as the premier tools for
characterizing proteome composition, structure, and function. 2 The new era of proteomics …

Reliable identification of protein-protein interactions by crosslinking mass spectrometry

S Lenz, LR Sinn, FJ O'Reilly, L Fischer… - Nature …, 2021 - nature.com
Protein-protein interactions govern most cellular pathways and processes, and multiple
technologies have emerged to systematically map them. Assessing the error of interaction …

Protein tertiary structure by crosslinking/mass spectrometry

M Schneider, A Belsom, J Rappsilber - Trends in biochemical sciences, 2018 - cell.com
Observing the structures of proteins within the cell and tracking structural changes under
different cellular conditions are the ultimate challenges for structural biology. This, however …

Retention time prediction using neural networks increases identifications in crosslinking mass spectrometry

SH Giese, LR Sinn, F Wegner, J Rappsilber - Nature communications, 2021 - nature.com
Crosslinking mass spectrometry has developed into a robust technique that is increasingly
used to investigate the interactomes of organelles and cells. However, the incomplete and …

Optimized fragmentation improves the identification of peptides cross-linked by MS-cleavable reagents

CE Stieger, P Doppler, K Mechtler - Journal of proteome research, 2019 - ACS Publications
Cross-linking mass spectrometry is becoming increasingly popular, and current advances
are widening the applicability of the technique so that it can be utilized by nonspecialist …

Identification and characterization of protein cross-links induced by oxidative reactions

P Hägglund, M Mariotti, MJ Davies - Expert review of proteomics, 2018 - Taylor & Francis
Introduction: Protein cross-links are common in biological systems and are generated both
deliberately as a part of normal metabolism and also accidently as a result of exposure to …

Optimizing the parameters governing the fragmentation of cross-linked peptides in a tribrid mass spectrometer

L Kolbowski, ML Mendes, J Rappsilber - Analytical chemistry, 2017 - ACS Publications
We compared the five different ways of fragmentation available on a tribrid mass
spectrometer and optimized their collision energies with regard to optimal sequence …

Chemical cross-linking in the structural analysis of protein assemblies

F Chu, DT Thornton, HT Nguyen - Methods, 2018 - Elsevier
For decades, chemical cross-linking of proteins has been an established method to study
protein interaction partners. The chemical cross-linking approach has recently been revived …