Pharmacogenomics beyond single common genetic variants: the way forward

VM Lauschke, Y Zhou… - Annual Review of …, 2024 - annualreviews.org
Interindividual variability in genes encoding drug-metabolizing enzymes, transporters,
receptors, and human leukocyte antigens has a major impact on a patient's response to …

[HTML][HTML] Supervised machine learning in drug discovery and development: Algorithms, applications, challenges, and prospects

G Obaido, ID Mienye, OF Egbelowo… - Machine Learning with …, 2024 - Elsevier
Drug discovery and development is a time-consuming process that involves identifying,
designing, and testing new drugs to address critical medical needs. In recent years, machine …

Challenges and opportunities associated with rare-variant pharmacogenomics

Y Zhou, R Tremmel, E Schaeffeler, M Schwab… - Trends in …, 2022 - cell.com
Recent advances in next-generation sequencing (NGS) have resulted in the identification of
tens of thousands of rare pharmacogenetic variations with unknown functional effects …

Artificial intelligence in clinical pharmacology: a case study and scoping review of large language models and bioweapon potential

I Rubinic, M Kurtov, I Rubinic, R Likic… - British Journal of …, 2024 - Wiley Online Library
This paper aims to explore the possibility of employing large language models (LLMs)–a
type of artificial intelligence (AI)–in clinical pharmacology, with a focus on its possible …

Development of an extensive workflow for comprehensive clinical pharmacogenomic profiling: lessons from a pilot study on 100 whole exome sequencing data

A Tafazoli, M van der Lee, JJ Swen, A Zeller… - The …, 2022 - nature.com
This pilot study is aimed at implementing an approach for comprehensive clinical
pharmacogenomics (PGx) profiling. Fifty patients with cardiovascular diseases and 50 …

Pharmacogenomic-guided dosing of fluoropyrimidines beyond DPYD: time for a polygenic algorithm?

A Maslarinou, VG Manolopoulos… - Frontiers in Pharmacology, 2023 - frontiersin.org
Fluoropyrimidines are chemotherapeutic agents widely used for the treatment of various
solid tumors. Commonly prescribed FPs include 5-fluorouracil (5-FU) and its oral prodrugs …

Pharmacovariome scanning using whole pharmacogene resequencing coupled with deep computational analysis and machine learning for clinical …

A Tafazoli, J Mikros, F Khaghani, M Alimardani… - Human Genomics, 2023 - Springer
Background This pilot study aims to identify and functionally assess pharmacovariants in
whole exome sequencing data. While detection of known variants has benefited from …

Identification and functional validation of novel pharmacogenomic variants using a next-generation sequencing-based approach for clinical pharmacogenomics

S Siamoglou, M Koromina, E Hishinuma… - Pharmacological …, 2022 - Elsevier
Inter-individual variability in pharmacokinetics and drug response is heavily influenced by
single-nucleotide variants (SNVs) and copy-number variations (CNVs) in genes with …

One step ahead in realizing pharmacogenetics in low-and middle-income countries: what should we do?

Y Ausi, MI Barliana, MJ Postma… - Journal of …, 2024 - Taylor & Francis
Pharmacogenetics is a promising approach in future personalized medicine. This field holds
excellent prospects for healthcare quality acceleration. It promotes the transition to the …

A paradigm shift in pharmacogenomics: From candidate polymorphisms to comprehensive sequencing

Y Zhou, S Koutsilieri, E Eliasson… - Basic & Clinical …, 2022 - Wiley Online Library
Genetic factors have long been recognized as important determinants of interindividual
variability in drug efficacy and toxicity. However, despite the increasing number of …