Adapterama I: universal stubs and primers for 384 unique dual-indexed or 147,456 combinatorially-indexed Illumina libraries (iTru & iNext)

TC Glenn, RA Nilsen, TJ Kieran, JG Sanders… - PeerJ, 2019 - peerj.com
Massively parallel DNA sequencing offers many benefits, but major inhibitory cost factors
include:(1) start-up (ie, purchasing initial reagents and equipment);(2) buyin (ie, getting the …

A review of an emerging tool to estimate population parameters: the close-kin mark-recapture method

L Casas, F Saborido-Rey - Frontiers in Marine Science, 2023 - frontiersin.org
Knowing the number of individuals in a population is fundamental for the sustainable
management of exploited marine resources but estimating this parameter is often extremely …

Individual heterozygosity predicts translocation success in threatened desert tortoises

PA Scott, LJ Allison, KJ Field, RC Averill-Murray… - Science, 2020 - science.org
Anthropogenic environmental modification is placing as many as 1 million species at risk of
extinction. One management action for reducing extinction risk is translocation of individuals …

Reduced-representation libraries in insect genetics

KR Hopper - Current Opinion in Insect Science, 2023 - Elsevier
Genotyping-by-sequencing of reduced-representation libraries has ushered in an era where
genome-wide data can be gotten for any species. Here, I review research on this topic …

Island-specific evolution of a sex-primed autosome in a sexual planarian

L Guo, JS Bloom, D Dols-Serrate, J Boocock… - Nature, 2022 - nature.com
The sexual strain of the planarian Schmidtea mediterranea, indigenous to Tunisia and
several Mediterranean islands, is a hermaphrodite,. Here we isolate individual …

River Drainage Reorganization and Reticulate Evolution in the Two-Lined Salamander (Eurycea bislineata) Species Complex

TW Pierson, KH Kozak, TC Glenn… - Systematic …, 2024 - academic.oup.com
The origin and eventual loss of biogeographic barriers can create alternating periods of
allopatry and secondary contact, facilitating gene flow among distinct metapopulations and …

The genomic response to urbanization in the damselfly Ischnura elegans

W Babik, K Dudek, M Marszałek… - Evolutionary …, 2023 - Wiley Online Library
The complex and rapid environmental changes brought about by urbanization pose
significant challenges to organisms. The multifaceted effects of urbanization often make it …

Displaced clines in an avian hybrid zone (Thamnophilidae: Rhegmatorhina) within an Amazonian interfluve

G Del-Rio, MA Rego, BM Whitney, F Schunck… - …, 2022 - academic.oup.com
Secondary contact between species often results in the formation of a hybrid zone, with the
eventual fates of the hybridizing species dependent on evolutionary and ecological forces …

Simulation with RADinitio improves RADseq experimental design and sheds light on sources of missing data

AG Rivera‐Colón, NC Rochette… - Molecular ecology …, 2021 - Wiley Online Library
Restriction‐site associated DNA sequencing (RADseq) has become a powerful and
versatile tool in modern population genomics, enabling large‐scale evolutionary and …

Integrative species delimitation reveals cryptic diversity in the southern Appalachian Antrodiaetus unicolor (Araneae: Antrodiaetidae) species complex

LG Newton, J Starrett, BE Hendrixson… - Molecular …, 2020 - Wiley Online Library
Although species delimitation can be highly contentious, the development of reliable
methods to accurately ascertain species boundaries is an imperative step in cataloguing …