Evolution and functional cross‐talk of protein post‐translational modifications

P Beltrao, P Bork, NJ Krogan… - Molecular systems …, 2013 - embopress.org
Protein post‐translational modifications (PTM s) allow the cell to regulate protein activity and
play a crucial role in the response to changes in external conditions or internal states …

Short linear motifs – ex nihilo evolution of protein regulation

NE Davey, MS Cyert, AM Moses - Cell Communication and Signaling, 2015 - Springer
Short sequence motifs are ubiquitous across the three major types of biomolecules:
hundreds of classes and thousands of instances of DNA regulatory elements, RNA motifs …

Comprehensive analysis of the human SH3 domain family reveals a wide variety of non-canonical specificities

J Teyra, H Huang, S Jain, X Guan, A Dong, Y Liu… - Structure, 2017 - cell.com
SH3 domains are protein modules that mediate protein-protein interactions in many
eukaryotic signal transduction pathways. The majority of SH3 domains studied thus far act …

Large-scale interaction profiling of PDZ domains through proteomic peptide-phage display using human and viral phage peptidomes

Y Ivarsson, R Arnold, M McLaughlin… - Proceedings of the …, 2014 - National Acad Sciences
The human proteome contains a plethora of short linear motifs (SLiMs) that serve as binding
interfaces for modular protein domains. Such interactions are crucial for signaling and other …

A MEC-2/stomatin condensate liquid-to-solid phase transition controls neuronal mechanotransduction during touch sensing

N Sanfeliu-Cerdán, F Català-Castro, B Mateos… - Nature Cell …, 2023 - nature.com
A growing body of work suggests that the material properties of biomolecular condensates
ensuing from liquid–liquid phase separation change with time. How this aging process is …

[HTML][HTML] Network medicine in pathobiology

LYH Lee, J Loscalzo - The American Journal of Pathology, 2019 - Elsevier
The past decade has witnessed exponential growth in the generation of high-throughput
human data across almost all known dimensions of biological systems. The discipline of …

Identifying new substrates and functions for an old enzyme: calcineurin

J Roy, MS Cyert - Cold Spring Harbor Perspectives in …, 2020 - cshperspectives.cshlp.org
Biological processes are dynamically regulated by signaling networks composed of protein
kinases and phosphatases. Calcineurin, or PP3, is a conserved phosphoserine …

Protein context shapes the specificity of SH3 domain-mediated interactions in vivo

U Dionne, É Bourgault, AK Dubé, D Bradley… - Nature …, 2021 - nature.com
Protein–protein interactions (PPIs) between modular binding domains and their target
peptide motifs are thought to largely depend on the intrinsic binding specificities of the …

Neuroblastoma tyrosine kinase signaling networks involve FYN and LYN in endosomes and lipid rafts

J Palacios-Moreno, L Foltz, A Guo… - PLoS computational …, 2015 - journals.plos.org
Protein phosphorylation plays a central role in creating a highly dynamic network of
interacting proteins that reads and responds to signals from growth factors in the cellular …

SRC homology 3 domains: Multifaceted binding modules

U Dionne, LJ Percival, FJM Chartier, CR Landry… - Trends in Biochemical …, 2022 - cell.com
The assembly of complexes following the detection of extracellular signals is often controlled
by signaling proteins comprising multiple peptide binding modules. The SRC homology …