Network pharmacology: curing causal mechanisms instead of treating symptoms
For complex diseases, most drugs are highly ineffective, and the success rate of drug
discovery is in constant decline. While low quality, reproducibility issues, and translational …
discovery is in constant decline. While low quality, reproducibility issues, and translational …
Artificial intelligence in cancer target identification and drug discovery
Artificial intelligence is an advanced method to identify novel anticancer targets and discover
novel drugs from biology networks because the networks can effectively preserve and …
novel drugs from biology networks because the networks can effectively preserve and …
Identifying drug–target interactions based on graph convolutional network and deep neural network
Identification of new drug–target interactions (DTIs) is an important but a time-consuming
and costly step in drug discovery. In recent years, to mitigate these drawbacks, researchers …
and costly step in drug discovery. In recent years, to mitigate these drawbacks, researchers …
A mini review of node centrality metrics in biological networks
The diversity of nodes in a complex network causes each node to have varying significance,
and the important nodes often have a significant impact on the structure and function of the …
and the important nodes often have a significant impact on the structure and function of the …
Controlling complex networks with complex nodes
Real-world networks often consist of millions of heterogenous elements that interact at
multiple timescales and length scales. The fields of statistical physics and control theory both …
multiple timescales and length scales. The fields of statistical physics and control theory both …
Control principles of complex systems
YY Liu, AL Barabási - Reviews of Modern Physics, 2016 - APS
A reflection of our ultimate understanding of a complex system is our ability to control its
behavior. Typically, control has multiple prerequisites: it requires an accurate map of the …
behavior. Typically, control has multiple prerequisites: it requires an accurate map of the …
Computational network biology: data, models, and applications
Biological entities are involved in intricate and complex interactions, in which uncovering the
biological information from the network concepts are of great significance. Benefiting from …
biological information from the network concepts are of great significance. Benefiting from …
[HTML][HTML] Network resilience
Many systems on our planet shift abruptly and irreversibly from the desired state to an
undesired state when forced across a “tipping point”. Some examples are mass extinctions …
undesired state when forced across a “tipping point”. Some examples are mass extinctions …
Human gene essentiality
A gene can be defined as essential when loss of its function compromises viability of the
individual (for example, embryonic lethality) or results in profound loss of fitness. At the …
individual (for example, embryonic lethality) or results in profound loss of fitness. At the …
Structure-based control of complex networks with nonlinear dynamics
What can we learn about controlling a system solely from its underlying network structure?
Here we adapt a recently developed framework for control of networks governed by a broad …
Here we adapt a recently developed framework for control of networks governed by a broad …