A guide to state–space modeling of ecological time series

M Auger‐Méthé, K Newman, D Cole… - Ecological …, 2021 - Wiley Online Library
State–space models (SSMs) are an important modeling framework for analyzing ecological
time series. These hierarchical models are commonly used to model population dynamics …

Hidden Markov models: Pitfalls and opportunities in ecology

R Glennie, T Adam, V Leos‐Barajas… - Methods in Ecology …, 2023 - Wiley Online Library
Abstract Hidden Markov models (HMMs) and their extensions are attractive methods for
analysing ecological data where noisy, multivariate measurements are made of a hidden …

Optimizing the use of biologgers for movement ecology research

HJ Williams, LA Taylor, S Benhamou… - Journal of Animal …, 2020 - Wiley Online Library
The paradigm‐changing opportunities of biologging sensors for ecological research,
especially movement ecology, are vast, but the crucial questions of how best to match the …

moveHMM: an R package for the statistical modelling of animal movement data using hidden Markov models

T Michelot, R Langrock… - Methods in Ecology and …, 2016 - Wiley Online Library
Due to the substantial progress in tracking technology, recent years have seen an explosion
in the amount of movement data being collected. This has led to a huge demand for …

Path segmentation for beginners: an overview of current methods for detecting changes in animal movement patterns

H Edelhoff, J Signer, N Balkenhol - Movement ecology, 2016 - Springer
Increased availability of high-resolution movement data has led to the development of
numerous methods for studying changes in animal movement behavior. Path segmentation …

Animal-borne telemetry: an integral component of the ocean observing toolkit

R Harcourt, AMM Sequeira, X Zhang… - Frontiers in Marine …, 2019 - frontiersin.org
Animal telemetry is a powerful tool for observing marine animals and the physical
environments that they inhabit, from coastal and continental shelf ecosystems to polar seas …

What is the animal doing? Tools for exploring behavioural structure in animal movements

E Gurarie, C Bracis, M Delgado… - Journal of Animal …, 2016 - Wiley Online Library
Movement data provide a window–often our only window–into the cognitive, social and
biological processes that underlie the behavioural ecology of animals in the wild. Robust …

[HTML][HTML] Beyond simple laboratory studies: developing sophisticated models to study rich behavior

A Maselli, J Gordon, M Eluchans, GL Lancia… - Physics of Life …, 2023 - Elsevier
Psychology and neuroscience are concerned with the study of behavior, of internal cognitive
processes, and their neural foundations. However, most laboratory studies use constrained …

Statistical modelling of individual animal movement: an overview of key methods and a discussion of practical challenges

TA Patterson, A Parton, R Langrock… - AStA Advances in …, 2017 - Springer
With the influx of complex and detailed tracking data gathered from electronic tracking
devices, the analysis of animal movement data has recently emerged as a cottage industry …

Navigating through the r packages for movement

R Joo, ME Boone, TA Clay, SC Patrick… - Journal of Animal …, 2020 - Wiley Online Library
The advent of miniaturized biologging devices has provided ecologists with unprecedented
opportunities to record animal movement across scales, and led to the collection of ever …