Transcription-coupled nucleotide excision repair and the transcriptional response to UV-induced DNA damage

N Nieto Moreno, AM Olthof… - Annual review of …, 2023 - annualreviews.org
Ultraviolet (UV) irradiation and other genotoxic stresses induce bulky DNA lesions, which
threaten genome stability and cell viability. Cells have evolved two main repair pathways to …

RNA polymerase pausing, stalling and bypass during transcription of damaged DNA: from molecular basis to functional consequences

A Agapov, A Olina, A Kulbachinskiy - Nucleic Acids Research, 2022 - academic.oup.com
Cellular DNA is continuously transcribed into RNA by multisubunit RNA polymerases
(RNAPs). The continuity of transcription can be disrupted by DNA lesions that arise from the …

Structural and non-coding variants increase the diagnostic yield of clinical whole genome sequencing for rare diseases

AT Pagnamenta, C Camps, E Giacopuzzi, JM Taylor… - Genome medicine, 2023 - Springer
Background Whole genome sequencing is increasingly being used for the diagnosis of
patients with rare diseases. However, the diagnostic yields of many studies, particularly …

Mutation-specific pathophysiological mechanisms define different neurodevelopmental disorders associated with SATB1 dysfunction

J Den Hoed, E de Boer, N Voisin… - The American Journal of …, 2021 - cell.com
Whereas large-scale statistical analyses can robustly identify disease-gene relationships,
they do not accurately capture genotype-phenotype correlations or disease mechanisms …

De novo variants implicate chromatin modification, transcriptional regulation, and retinoic acid signaling in syndromic craniosynostosis

AT Timberlake, S McGee, G Allington, E Kiziltug… - The American Journal of …, 2023 - cell.com
Craniosynostosis (CS) is the most common congenital cranial anomaly. Several Mendelian
forms of syndromic CS are well described, but a genetic etiology remains elusive in a …

Targeted protein degradation reveals RNA Pol II heterogeneity and functional diversity

Y Li, J Huang, J Zhu, L Bao, H Wang, Y Jiang, K Tian… - Molecular Cell, 2022 - cell.com
Summary RNA polymerase II (RNA Pol II) subunits are thought to be involved in various
transcription-associated processes, but it is unclear whether they play different regulatory …

Exome sequencing reveals predominantly de novo variants in disorders with intellectual disability (ID) in the founder population of Finland

I Järvelä, T Määttä, A Acharya, J Leppälä… - Human Genetics, 2021 - Springer
The genetics of autosomal recessive intellectual disability (ARID) has mainly been studied in
consanguineous families, however, founder populations may also be of interest to study …

[HTML][HTML] Venus: elucidating the impact of amino acid variants on protein function beyond structure destabilisation

MP Ferla, AT Pagnamenta, L Koukouflis… - Journal of Molecular …, 2022 - Elsevier
Exploring the functional effect of a non-synonymous coding variant at the protein level
requires multiple pieces of information to be interpreted appropriately. This is particularly …

Clinical approach to inborn errors of metabolism in paediatrics

JM Saudubray, Á García-Cazorla - Inborn metabolic diseases: diagnosis …, 2022 - Springer
Inborn errors of metabolism (IEM) are individually rare, but collectively numerous. The
application of tandem mass spectrometry (tandem MS) to newborn screening and prenatal …

Evolutionary conservation of the fidelity of transcription

C Chung, BM Verheijen, Z Navapanich… - Nature …, 2023 - nature.com
Accurate transcription is required for the faithful expression of genetic information. However,
relatively little is known about the molecular mechanisms that control the fidelity of …