Transcription-coupled nucleotide excision repair and the transcriptional response to UV-induced DNA damage
N Nieto Moreno, AM Olthof… - Annual review of …, 2023 - annualreviews.org
Ultraviolet (UV) irradiation and other genotoxic stresses induce bulky DNA lesions, which
threaten genome stability and cell viability. Cells have evolved two main repair pathways to …
threaten genome stability and cell viability. Cells have evolved two main repair pathways to …
RNA polymerase pausing, stalling and bypass during transcription of damaged DNA: from molecular basis to functional consequences
Cellular DNA is continuously transcribed into RNA by multisubunit RNA polymerases
(RNAPs). The continuity of transcription can be disrupted by DNA lesions that arise from the …
(RNAPs). The continuity of transcription can be disrupted by DNA lesions that arise from the …
Structural and non-coding variants increase the diagnostic yield of clinical whole genome sequencing for rare diseases
AT Pagnamenta, C Camps, E Giacopuzzi, JM Taylor… - Genome medicine, 2023 - Springer
Background Whole genome sequencing is increasingly being used for the diagnosis of
patients with rare diseases. However, the diagnostic yields of many studies, particularly …
patients with rare diseases. However, the diagnostic yields of many studies, particularly …
Mutation-specific pathophysiological mechanisms define different neurodevelopmental disorders associated with SATB1 dysfunction
J Den Hoed, E de Boer, N Voisin… - The American Journal of …, 2021 - cell.com
Whereas large-scale statistical analyses can robustly identify disease-gene relationships,
they do not accurately capture genotype-phenotype correlations or disease mechanisms …
they do not accurately capture genotype-phenotype correlations or disease mechanisms …
De novo variants implicate chromatin modification, transcriptional regulation, and retinoic acid signaling in syndromic craniosynostosis
Craniosynostosis (CS) is the most common congenital cranial anomaly. Several Mendelian
forms of syndromic CS are well described, but a genetic etiology remains elusive in a …
forms of syndromic CS are well described, but a genetic etiology remains elusive in a …
Targeted protein degradation reveals RNA Pol II heterogeneity and functional diversity
Y Li, J Huang, J Zhu, L Bao, H Wang, Y Jiang, K Tian… - Molecular Cell, 2022 - cell.com
Summary RNA polymerase II (RNA Pol II) subunits are thought to be involved in various
transcription-associated processes, but it is unclear whether they play different regulatory …
transcription-associated processes, but it is unclear whether they play different regulatory …
Exome sequencing reveals predominantly de novo variants in disorders with intellectual disability (ID) in the founder population of Finland
The genetics of autosomal recessive intellectual disability (ARID) has mainly been studied in
consanguineous families, however, founder populations may also be of interest to study …
consanguineous families, however, founder populations may also be of interest to study …
[HTML][HTML] Venus: elucidating the impact of amino acid variants on protein function beyond structure destabilisation
MP Ferla, AT Pagnamenta, L Koukouflis… - Journal of Molecular …, 2022 - Elsevier
Exploring the functional effect of a non-synonymous coding variant at the protein level
requires multiple pieces of information to be interpreted appropriately. This is particularly …
requires multiple pieces of information to be interpreted appropriately. This is particularly …
Clinical approach to inborn errors of metabolism in paediatrics
JM Saudubray, Á García-Cazorla - Inborn metabolic diseases: diagnosis …, 2022 - Springer
Inborn errors of metabolism (IEM) are individually rare, but collectively numerous. The
application of tandem mass spectrometry (tandem MS) to newborn screening and prenatal …
application of tandem mass spectrometry (tandem MS) to newborn screening and prenatal …
Evolutionary conservation of the fidelity of transcription
C Chung, BM Verheijen, Z Navapanich… - Nature …, 2023 - nature.com
Accurate transcription is required for the faithful expression of genetic information. However,
relatively little is known about the molecular mechanisms that control the fidelity of …
relatively little is known about the molecular mechanisms that control the fidelity of …