Paleoproteomics
C Warinner, K Korzow Richter, MJ Collins - Chemical reviews, 2022 - ACS Publications
Paleoproteomics, the study of ancient proteins, is a rapidly growing field at the intersection of
molecular biology, paleontology, archaeology, paleoecology, and history. Paleoproteomics …
molecular biology, paleontology, archaeology, paleoecology, and history. Paleoproteomics …
[HTML][HTML] The need for a human pangenome reference sequence
The reference human genome sequence is inarguably the most important and widely used
resource in the fields of human genetics and genomics. It has transformed the conduct of …
resource in the fields of human genetics and genomics. It has transformed the conduct of …
[HTML][HTML] Towards complete and error-free genome assemblies of all vertebrate species
High-quality and complete reference genome assemblies are fundamental for the
application of genomics to biology, disease, and biodiversity conservation. However, such …
application of genomics to biology, disease, and biodiversity conservation. However, such …
[HTML][HTML] Dense sampling of bird diversity increases power of comparative genomics
Whole-genome sequencing projects are increasingly populating the tree of life and
characterizing biodiversity,,–. Sparse taxon sampling has previously been proposed to …
characterizing biodiversity,,–. Sparse taxon sampling has previously been proposed to …
BlobToolKit–interactive quality assessment of genome assemblies
R Challis, E Richards, J Rajan… - G3: Genes …, 2020 - academic.oup.com
Reconstruction of target genomes from sequence data produced by instruments that are
agnostic as to the species-of-origin may be confounded by contaminant DNA. Whether …
agnostic as to the species-of-origin may be confounded by contaminant DNA. Whether …
3D genomics across the tree of life reveals condensin II as a determinant of architecture type
C Hoencamp, O Dudchenko, AMO Elbatsh… - Science, 2021 - science.org
We investigated genome folding across the eukaryotic tree of life. We find two types of three-
dimensional (3D) genome architectures at the chromosome scale. Each type appears and …
dimensional (3D) genome architectures at the chromosome scale. Each type appears and …
The Ensembl gene annotation system
The Ensembl gene annotation system has been used to annotate over 70 different
vertebrate species across a wide range of genome projects. Furthermore, it generates the …
vertebrate species across a wide range of genome projects. Furthermore, it generates the …
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
Long-range and highly accurate de novo assembly from short-read data is one of the most
pressing challenges in genomics. Recently, it has been shown that read pairs generated by …
pressing challenges in genomics. Recently, it has been shown that read pairs generated by …
Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
R Kajitani, K Toshimoto, H Noguchi, A Toyoda… - Genome …, 2014 - genome.cshlp.org
Although many de novo genome assembly projects have recently been conducted using
high-throughput sequencers, assembling highly heterozygous diploid genomes is a …
high-throughput sequencers, assembling highly heterozygous diploid genomes is a …
Primer3—new capabilities and interfaces
A Untergasser, I Cutcutache, T Koressaar… - Nucleic acids …, 2012 - academic.oup.com
Polymerase chain reaction (PCR) is a basic molecular biology technique with a multiplicity
of uses, including deoxyribonucleic acid cloning and sequencing, functional analysis of …
of uses, including deoxyribonucleic acid cloning and sequencing, functional analysis of …